RchiOBHm_Chr2g0133311

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000405
Physical Location & Seq
Reverse (-)
50059031 .. 50059720
690 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50450

Sequence Viewer

Length: 585 bp
ATGGAAATGGAGTTCAGGTCTGGAGTGGACGACGCATGGTATGCCGTCAAAATTTATACGGAAGACAATAGTGCGGAACGGCTAACAGTGAAGTTTTGCAACTTTGAAGACGAGTACGACGAAGTGTACGAGGCCCAGGACCTAACGTCAGCTAACCACATGACGAACTTCCTGTCGAGGTTCAGGCTTGTGTCTATTCAGGTGCAGGACTCGGAATGCCCGAACGTGGTGGAGGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGACAATTGCCGCTTCTATGATGCTGTGAAATGTAAGAAGCATCGAAGTGTGGAAGGAGAAGAAGAATGCCTATGCAAGTTCGTTCTATTCTGGAAACATTGGCCAAAGGGTGGAAGCCTTACGACTCAAGCCGTCAGAGATATCTGTAGAGTCCAGCCTCGGACGGAAGAAGTAGATCCACTTCTTGCCTTGTTTCTACAAACGACAAGGAGTAGGATCCAAACTAATGATCGAGCCTTGTTCCTCTTGCTACCTCTTCTACAGTACCTCATGAGGCCTCTTCGAAAGGTTTGTAGTTTGTACATATTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

194

Amino Acids

22.58

Weight (kDa)

5.32

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 139 6.7e-27 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 380
AciI CCGC 3 cut(s) 74, 252, 280
AclWI GGATC 3 cut(s) 440, 481, 494
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 4 cut(s) 116, 128, 536, 572
AfiI CCNNNNNNNGG 2 cut(s) 226, 380
AgsI TTSAA 1 cut(s) 107
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 135
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwI GGATC 3 cut(s) 440, 481, 494
AoxI GGCC 3 cut(s) 132, 371, 545
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 2 cut(s) 133, 139
AsuII TTCGAA 1 cut(s) 553
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 373
BamHI GGATCC 1 cut(s) 486
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 69, 114
BceAI ACGGC 4 cut(s) 29, 95, 239, 386
BciT130I CCWGG 1 cut(s) 137
BfmI CTRYAG 2 cut(s) 415, 530
BisI GCNGC 2 cut(s) 252, 280
BlsI GCNGC 2 cut(s) 253, 281
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 133, 139
BmiI GGNNCC 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 280, 319
BpiI GAAGAC 2 cut(s) 69, 114
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 135, 428
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 380
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 135, 428
BseLI CCNNNNNNNGG 2 cut(s) 226, 380
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 3 cut(s) 134, 373, 547
BslI CCNNNNNNNGG 2 cut(s) 226, 380
BsmI GAATGC 2 cut(s) 221, 341
BsnI GGCC 3 cut(s) 134, 373, 547
Bsp119I TTCGAA 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 3 cut(s) 445, 486, 499
BspACI CCGC 3 cut(s) 74, 252, 280
BspANI GGCC 3 cut(s) 134, 373, 547
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 1 cut(s) 488
BspPI GGATC 3 cut(s) 440, 481, 494
BspT104I TTCGAA 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 570
BssECI CCNNGG 2 cut(s) 135, 428
BssMI GATC 3 cut(s) 445, 486, 499
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 88, 534
Bst6I CTCTTC 2 cut(s) 531, 555
BstAPI GCANNNNNTGC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 570
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 448, 489, 502
BstMBI GATC 3 cut(s) 445, 486, 499
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 137
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 2 cut(s) 415, 530
BstV2I GAAGAC 2 cut(s) 69, 114
BstX2I RGATCY 2 cut(s) 445, 486
BstYI RGATCY 2 cut(s) 445, 486
BsuRI GGCC 3 cut(s) 134, 373, 547
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 540
Cfr13I GGNCC 2 cut(s) 133, 139
CseI GACGC 1 cut(s) 41
Csp6I GTAC 4 cut(s) 115, 127, 535, 571
CviAII CATG 4 cut(s) 36, 160, 238, 541
CviQI GTAC 4 cut(s) 115, 127, 535, 571
DpnI GATC 3 cut(s) 447, 488, 501
DpnII GATC 3 cut(s) 445, 486, 499
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 371
Eam1104I CTCTTC 2 cut(s) 531, 555
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 2 cut(s) 531, 555
Eco147I AGGCCT 1 cut(s) 547
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 135
EcoRV GATATC 1 cut(s) 412
FaeI CATG 4 cut(s) 39, 163, 241, 544
FaiI YATR 9 cut(s) 37, 42, 57, 161, 239, 288, 343, 542, 575
FatI CATG 4 cut(s) 35, 159, 237, 540
Fnu4HI GCNGC 2 cut(s) 252, 280
Fsp4HI GCNGC 2 cut(s) 252, 280
GluI GCNGC 2 cut(s) 252, 280
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 3 cut(s) 134, 373, 547
HgaI GACGC 1 cut(s) 41
Hin1II CATG 4 cut(s) 39, 163, 241, 544
HinfI GANTC 3 cut(s) 209, 394, 420
Hpy166II GTNNAC 2 cut(s) 28, 127
Hpy188I TCNGA 3 cut(s) 214, 407, 432
Hpy188III TCNNGA 3 cut(s) 21, 361, 541
Hpy8I GTNNAC 2 cut(s) 28, 127
Hpy99I CGWCG 2 cut(s) 35, 122
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 2 cut(s) 88, 534
HpyCH4IV ACGT 2 cut(s) 146, 225
HpyCH4V TGCA 3 cut(s) 99, 205, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpySE526I ACGT 2 cut(s) 146, 225
Hsp92II CATG 4 cut(s) 39, 163, 241, 544
Kzo9I GATC 3 cut(s) 445, 486, 499
LpnPI CCDG 9 cut(s) 6, 122, 149, 169, 185, 185, 191, 346, 437
LweI GCATC 2 cut(s) 280, 319
MaeII ACGT 2 cut(s) 146, 225
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 447, 488, 501
MboI GATC 3 cut(s) 445, 486, 499
MboII GAAGA 7 cut(s) 74, 119, 341, 344, 449, 518, 542
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 2 cut(s) 445, 486
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 2 cut(s) 51, 274
MluNI TGGCCA 1 cut(s) 373
MlyI GAGTC 3 cut(s) 203, 388, 429
MnlI CCTC 9 cut(s) 124, 171, 226, 438, 524, 534, 537, 548, 558
Mox20I TGGCCA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 373
MseI TTAA 1 cut(s) 583
MslI CAYNNNNRTG 2 cut(s) 242, 315
Msp20I TGGCCA 1 cut(s) 373
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 2 cut(s) 221, 341
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 3 cut(s) 445, 486, 499
NlaIII CATG 4 cut(s) 39, 163, 241, 544
NlaIV GGNNCC 1 cut(s) 488
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 553
PaeI GCATGC 1 cut(s) 241
PagI TCATGA 1 cut(s) 540
PceI AGGCCT 1 cut(s) 547
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 126, 218
PctI GAATGC 2 cut(s) 221, 341
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 2 cut(s) 253, 281
PleI GAGTC 3 cut(s) 203, 388, 428
PpsI GAGTC 3 cut(s) 203, 388, 428
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 488
PspPI GGNCC 2 cut(s) 133, 139
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 2 cut(s) 445, 486
RsaI GTAC 4 cut(s) 116, 128, 536, 572
RsaNI GTAC 4 cut(s) 115, 127, 535, 571
RseI CAYNNNNRTG 2 cut(s) 242, 315
SaqAI TTAA 1 cut(s) 583
SatI GCNGC 2 cut(s) 252, 280
Sau3AI GATC 3 cut(s) 445, 486, 499
Sau96I GGNCC 2 cut(s) 133, 139
SchI GAGTC 3 cut(s) 203, 388, 429
ScrFI CCNGG 1 cut(s) 137
SfaNI GCATC 2 cut(s) 280, 319
SfcI CTRYAG 2 cut(s) 415, 530
SfuI TTCGAA 1 cut(s) 553
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 242, 315
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
SphI GCATGC 1 cut(s) 241
Sse9I AATT 2 cut(s) 51, 274
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 3 cut(s) 74, 252, 280
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 88, 534
TaiI ACGT 2 cut(s) 149, 228
TaqI TCGA 4 cut(s) 176, 313, 502, 553
TasI AATT 2 cut(s) 51, 274
TatI WGTACW 1 cut(s) 570
TauI GCSGC 2 cut(s) 254, 282
Tru1I TTAA 1 cut(s) 583
Tru9I TTAA 1 cut(s) 583
TscAI CASTG 1 cut(s) 93
TspGWI ACGGA 2 cut(s) 74, 449
TspRI CASTG 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.