Rw5G021290

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000405
Physical Location & Seq
Forward (+)
28555491 .. 28556177
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021290.1

Sequence Viewer

Length: 594 bp
ATGGCGTTAGAGTTCCGGTCCCACAAGGACGACGCCTGGTACGACGCTCGCCTACTCACGGAGGACACCGGCGCCGGCCTCCGCCTCAGAATCACCTTCGCCAACTTCTCCGACGCCCACGACGAGTTCGTCGGCGCCAACGACCTCGCCGCCCTCCCAGACCTCGACGCATTGCGCTCCCGCGTCCGCCGCCTCTCCCTCCAGCTCCAGGACTCCGAGTGCTCCTCCGTCGACAGAGGCCTCCTCGTCTGCGCCGCCCGCTCCGTCCACCCCGACGACCGCCGCTTCTTCGACGCCTTCGTCGACGGGGTTGTGCACGAGGAGCATAGGGTTGGGGAGGGAGGGCAGGAGGAGTGCACTTGCAGCTTTATTCTGGAGTGGATTCACGGCCCGCAAGTTGGGACTCTCGGTGTGGTGGCGCTTGAGAATATTTGCAGAGTCCGGCTGCCGGCGGTGGACGAAGAGATTGACCCGGCTTTGACCTCTTTTGTTAACGCGGTCAAGGAGAAGATGATTGAGAACACTTTTTCGAATTCGATTGAGAATTCTGGTGGTGGTGATTGTGAGGTAAGTTTTAATATTTTGGGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

197

Amino Acids

21.74

Weight (kDa)

4.59

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 145 2e-32 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 299
AccB1I GGYRCC 2 cut(s) 71, 134
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 2 cut(s) 231, 303
AccII CGCG 2 cut(s) 183, 497
AcsI RAATTY 3 cut(s) 532, 544, 588
AcyI GRCGYC 5 cut(s) 33, 72, 114, 135, 294
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 58, 208, 398, 448
AjnI CCWGG 2 cut(s) 35, 207
AluBI AGCT 2 cut(s) 205, 366
AluI AGCT 2 cut(s) 205, 366
Alw21I GWGCWC 3 cut(s) 224, 318, 359
Alw44I GTGCAC 2 cut(s) 314, 355
AoxI GGCC 3 cut(s) 76, 238, 388
ApaLI GTGCAC 2 cut(s) 314, 355
ApeKI GCWGC 2 cut(s) 363, 445
ApoI RAATTY 3 cut(s) 532, 544, 588
AspLEI GCGC 5 cut(s) 74, 137, 177, 254, 421
AspS9I GGNCC 2 cut(s) 18, 389
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 85, 569
AsuII TTCGAA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 18
BaeGI GKGCMC 2 cut(s) 318, 359
BanI GGYRCC 2 cut(s) 71, 134
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 3 cut(s) 224, 318, 359
BbvI GCAGC 2 cut(s) 375, 432
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 2 cut(s) 37, 209
BcnI CCSGG 1 cut(s) 473
BfoI RGCGCY 3 cut(s) 75, 138, 422
BisI GCNGC 6 cut(s) 150, 190, 255, 283, 364, 446
BlsI GCNGC 6 cut(s) 151, 191, 256, 284, 365, 447
Bme1390I CCNGG 3 cut(s) 37, 209, 473
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 2 cut(s) 18, 389
BmiI GGNNCC 3 cut(s) 20, 73, 136
BmrFI CCNGG 3 cut(s) 37, 209, 473
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 228, 260
BpmI CTGGAG 3 cut(s) 185, 191, 395
Bpu14I TTCGAA 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 473
BsaHI GRCGYC 5 cut(s) 33, 72, 114, 135, 294
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 208, 398, 448
Bse118I RCCGGY 3 cut(s) 68, 74, 448
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 2 cut(s) 37, 209
BseLI CCNNNNNNNGG 4 cut(s) 58, 208, 398, 448
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 4 cut(s) 214, 233, 335, 365
BseSI GKGCMC 2 cut(s) 318, 359
BseXI GCAGC 2 cut(s) 375, 432
Bsh1236I CGCG 2 cut(s) 183, 497
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 3 cut(s) 78, 240, 390
BshNI GGYRCC 2 cut(s) 71, 134
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 3 cut(s) 224, 318, 359
BsiSI CCGG 6 cut(s) 16, 69, 75, 442, 449, 473
BslFI GGGAC 2 cut(s) 4, 415
BslI CCNNNNNNNGG 4 cut(s) 58, 208, 398, 448
BsmFI GGGAC 2 cut(s) 4, 415
BsnI GGCC 3 cut(s) 78, 240, 390
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 224, 318, 359
BspANI GGCC 3 cut(s) 78, 240, 390
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 2 cut(s) 183, 497
BspLI GGNNCC 3 cut(s) 20, 73, 136
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 2 cut(s) 71, 134
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 170
BsrFI RCCGGY 3 cut(s) 68, 74, 448
BssAI RCCGGY 3 cut(s) 68, 74, 448
BssNI GRCGYC 5 cut(s) 33, 72, 114, 135, 294
BssSI CACGAG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 2 cut(s) 37, 209
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 5 cut(s) 33, 72, 114, 135, 294
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 5 cut(s) 49, 76, 259, 392, 450
BstDEI CTNAG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 183, 497
BstH2I RGCGCY 3 cut(s) 75, 138, 422
BstHHI GCGC 5 cut(s) 74, 137, 177, 254, 421
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 189, 258, 322, 363
BstNI CCWGG 2 cut(s) 37, 209
BstSCI CCNGG 3 cut(s) 35, 207, 471
BstSLI GKGCMC 2 cut(s) 318, 359
BstUI CGCG 2 cut(s) 183, 497
BstV1I GCAGC 2 cut(s) 375, 432
BsuRI GGCC 3 cut(s) 78, 240, 390
Cac8I GCNNGC 5 cut(s) 49, 76, 259, 392, 450
CfoI GCGC 5 cut(s) 74, 137, 177, 254, 421
Cfr10I RCCGGY 3 cut(s) 68, 74, 448
Cfr13I GGNCC 2 cut(s) 18, 389
CseI GACGC 6 cut(s) 41, 53, 122, 172, 176, 302
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 7 cut(s) 78, 205, 240, 366, 390, 445, 476
CviKI_1 RGCY 7 cut(s) 78, 205, 240, 366, 390, 445, 476
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 2 cut(s) 73, 136
DrdI GACNNNNNNGTC 2 cut(s) 128, 299
DseDI GACNNNNNNGTC 2 cut(s) 128, 299
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
EciI GGCGGA 2 cut(s) 71, 176
Eco147I AGGCCT 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 18
EcoRI GAATTC 2 cut(s) 532, 544
EcoRII CCWGG 2 cut(s) 35, 207
EgeI GGCGCC 2 cut(s) 73, 136
EheI GGCGCC 2 cut(s) 73, 136
FaiI YATR 1 cut(s) 327
FaqI GGGAC 2 cut(s) 4, 415
FauI CCCGC 3 cut(s) 188, 266, 399
FblI GTMKAC 2 cut(s) 231, 303
Fnu4HI GCNGC 6 cut(s) 150, 190, 255, 283, 364, 446
Fsp4HI GCNGC 6 cut(s) 150, 190, 255, 283, 364, 446
GlaI GCGC 5 cut(s) 73, 136, 176, 253, 420
GluI GCNGC 6 cut(s) 150, 190, 255, 283, 364, 446
GsuI CTGGAG 3 cut(s) 185, 191, 395
HaeII RGCGCY 3 cut(s) 75, 138, 422
HaeIII GGCC 3 cut(s) 78, 240, 390
HapII CCGG 6 cut(s) 16, 69, 75, 442, 449, 473
HgaI GACGC 6 cut(s) 41, 53, 122, 172, 176, 302
HhaI GCGC 5 cut(s) 74, 137, 177, 254, 421
Hin1I GRCGYC 5 cut(s) 33, 72, 114, 135, 294
Hin6I GCGC 5 cut(s) 72, 135, 175, 252, 419
HinP1I GCGC 5 cut(s) 72, 135, 175, 252, 419
HincII GTYRAC 3 cut(s) 232, 304, 493
HindII GTYRAC 3 cut(s) 232, 304, 493
HinfI GANTC 5 cut(s) 90, 212, 382, 403, 438
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 6 cut(s) 16, 69, 75, 442, 449, 473
HphI GGTGA 2 cut(s) 85, 569
Hpy166II GTNNAC 7 cut(s) 232, 268, 304, 316, 357, 457, 493
Hpy188I TCNGA 3 cut(s) 89, 112, 217
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 7 cut(s) 232, 268, 304, 316, 357, 457, 493
HpyAV CCTTC 2 cut(s) 106, 307
HpyCH4V TGCA 4 cut(s) 316, 357, 363, 435
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 258, 322, 363
HpyF3I CTNAG 1 cut(s) 86
Hsp92I GRCGYC 5 cut(s) 33, 72, 114, 135, 294
HspAI GCGC 5 cut(s) 72, 135, 175, 252, 419
KasI GGCGCC 2 cut(s) 71, 134
KroI GCCGGC 2 cut(s) 74, 448
KroNI GCCGGC 2 cut(s) 76, 450
KspAI GTTAAC 1 cut(s) 493
LmnI GCTCC 5 cut(s) 182, 210, 227, 266, 322
Lsp1109I GCAGC 2 cut(s) 375, 432
MbiI CCGCTC 1 cut(s) 261
MboII GAAGA 3 cut(s) 280, 473, 520
MhlI GDGCHC 3 cut(s) 224, 318, 359
MluCI AATT 3 cut(s) 532, 544, 588
Mly113I GGCGCC 2 cut(s) 72, 135
MlyI GAGTC 3 cut(s) 206, 397, 447
MmeI TCCRAC 1 cut(s) 135
MroNI GCCGGC 2 cut(s) 74, 448
MseI TTAA 3 cut(s) 492, 576, 592
MspI CCGG 6 cut(s) 16, 69, 75, 442, 449, 473
MspR9I CCNGG 3 cut(s) 37, 209, 473
MvaI CCWGG 2 cut(s) 37, 209
MvnI CGCG 2 cut(s) 183, 497
MwoI GCNNNNNNNGC 4 cut(s) 189, 258, 322, 363
NaeI GCCGGC 2 cut(s) 76, 450
NarI GGCGCC 2 cut(s) 72, 135
NciI CCSGG 1 cut(s) 473
NgoMIV GCCGGC 2 cut(s) 74, 448
NlaIV GGNNCC 3 cut(s) 20, 73, 136
NspV TTCGAA 1 cut(s) 530
PceI AGGCCT 1 cut(s) 240
PcsI WCGNNNNNNNCGW 6 cut(s) 39, 120, 126, 138, 297, 300
PdiI GCCGGC 2 cut(s) 76, 450
PfeI GAWTC 2 cut(s) 90, 382
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 6 cut(s) 151, 191, 256, 284, 365, 447
PleI GAGTC 3 cut(s) 206, 397, 446
PluTI GGCGCC 2 cut(s) 75, 138
PpsI GAGTC 3 cut(s) 206, 397, 446
Psp6I CCWGG 2 cut(s) 35, 207
PspGI CCWGG 2 cut(s) 35, 207
PspN4I GGNNCC 3 cut(s) 20, 73, 136
PspPI GGNCC 2 cut(s) 18, 389
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SalI GTCGAC 2 cut(s) 230, 302
SaqAI TTAA 3 cut(s) 492, 576, 592
SatI GCNGC 6 cut(s) 150, 190, 255, 283, 364, 446
Sau96I GGNCC 2 cut(s) 18, 389
SchI GAGTC 3 cut(s) 206, 397, 447
ScrFI CCNGG 3 cut(s) 37, 209, 473
SduI GDGCHC 3 cut(s) 224, 318, 359
SetI ASST 7 cut(s) 98, 147, 165, 207, 368, 485, 570
SfoI GGCGCC 2 cut(s) 73, 136
SfuI TTCGAA 1 cut(s) 530
SgrAI CRCCGGYG 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 302
SinI GGWCC 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 3 cut(s) 532, 544, 588
SseBI AGGCCT 1 cut(s) 240
SspDI GGCGCC 2 cut(s) 71, 134
SspI AATATT 2 cut(s) 430, 580
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 35, 207, 471
TaqI TCGA 6 cut(s) 165, 231, 291, 303, 530, 536
TasI AATT 3 cut(s) 532, 544, 588
TauI GCSGC 4 cut(s) 152, 192, 257, 285
TfiI GAWTC 2 cut(s) 90, 382
Tru1I TTAA 3 cut(s) 492, 576, 592
Tru9I TTAA 3 cut(s) 492, 576, 592
TseI GCWGC 2 cut(s) 363, 445
TspGWI ACGGA 3 cut(s) 74, 217, 253
VneI GTGCAC 2 cut(s) 314, 355
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 3 cut(s) 532, 544, 588
XmiI GTMKAC 2 cut(s) 231, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.