Rmu_sc0023254.1_g000004

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023254.1
OG0000405
Physical Location & Seq
Forward (+)
12506 .. 13184
679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023254.1_g000004.1.cds

Sequence Viewer

Length: 585 bp
atgactatggaaatggagttcaggtctggagtggacgacgcatggtatgccgtcaaaattttgacggaaggcaatagtgcggaacggctaacagtgaagttttgcaactttgaagacgagtacgacgaagtgtacgaggccaaggacctaacgtcagctaaccacatgacgaacttcctgtcgaggttcaggcctgtgtctattcaggtgcaggactcggaatgcccgaacgtggtggagggcatgctcgtgtgtgccgccgtttctgttacacccgacaattgccgcttctatgatgctgttgtgaaccgggtgaaatgtaagaagcatcgaagtgtggaaggagaagaagaatgcctatgcaagttcgttctattctggaaacatgggcaaaagggtggaagccttacgactcaagccgtcagagatttctgtagagtccagcctcggacggaagaagtagatccacttcttgccttgtttctacaaacgacaaggagtaggatccaaactaatgagtcgagccttgttcctcttgctacctcttctacagtacctcatgaggcctcttcgaaaggtttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

194

Amino Acids

21.9

Weight (kDa)

5.31

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 80, 258, 286
AclWI GGATC 3 cut(s) 458, 499, 512
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 3 cut(s) 122, 134, 555
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 1 cut(s) 113
AhdI GACNNNNNGTC 1 cut(s) 151
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AlwI GGATC 3 cut(s) 458, 499, 512
AoxI GGCC 3 cut(s) 138, 191, 564
ApoI RAATTY 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 572
AvaII GGWCC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 120
BceAI ACGGC 4 cut(s) 35, 101, 245, 404
BcnI CCSGG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 433, 549
BisI GCNGC 2 cut(s) 258, 286
BlsI GCNGC 2 cut(s) 259, 287
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 2 cut(s) 286, 337
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 141, 446
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 141, 446
BseLI CCNNNNNNNGG 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 3 cut(s) 140, 193, 566
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 232
BsmI GAATGC 2 cut(s) 227, 359
BsnI GGCC 3 cut(s) 140, 193, 566
Bsp119I TTCGAA 1 cut(s) 572
Bsp143I GATC 2 cut(s) 463, 504
BspACI CCGC 3 cut(s) 80, 258, 286
BspANI GGCC 3 cut(s) 140, 193, 566
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 506
BspPI GGATC 3 cut(s) 458, 499, 512
BspT104I TTCGAA 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 141, 446
BssMI GATC 2 cut(s) 463, 504
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 94, 553
Bst6I CTCTTC 2 cut(s) 550, 574
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 466, 507
BstMBI GATC 2 cut(s) 463, 504
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 433, 549
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 463, 504
BstYI RGATCY 2 cut(s) 463, 504
BsuRI GGCC 3 cut(s) 140, 193, 566
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 245
CciI TCATGA 1 cut(s) 559
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 121, 133, 554
CviAII CATG 5 cut(s) 42, 166, 244, 386, 560
CviJI RGCY 9 cut(s) 88, 140, 158, 193, 405, 419, 445, 525, 566
CviKI_1 RGCY 9 cut(s) 88, 140, 158, 193, 405, 419, 445, 525, 566
CviQI GTAC 3 cut(s) 121, 133, 554
DpnI GATC 2 cut(s) 465, 506
DpnII GATC 2 cut(s) 463, 504
DriI GACNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 550, 574
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 2 cut(s) 550, 574
Eco130I CCWWGG 1 cut(s) 141
Eco147I AGGCCT 2 cut(s) 193, 566
Eco47I GGWCC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 5 cut(s) 45, 169, 247, 389, 563
FaiI YATR 9 cut(s) 8, 43, 48, 167, 245, 294, 361, 387, 561
FatI CATG 5 cut(s) 41, 165, 243, 385, 559
Fnu4HI GCNGC 2 cut(s) 258, 286
Fsp4HI GCNGC 2 cut(s) 258, 286
GluI GCNGC 2 cut(s) 258, 286
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 3 cut(s) 140, 193, 566
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 45, 169, 247, 389, 563
HinfI GANTC 4 cut(s) 215, 412, 438, 518
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 34, 133, 307
Hpy188I TCNGA 3 cut(s) 220, 425, 450
Hpy188III TCNNGA 3 cut(s) 27, 379, 560
Hpy8I GTNNAC 3 cut(s) 34, 133, 307
Hpy99I CGWCG 2 cut(s) 41, 128
HpyAV CCTTC 2 cut(s) 62, 335
HpyCH4III ACNGT 2 cut(s) 94, 553
HpyCH4IV ACGT 2 cut(s) 152, 231
HpyCH4V TGCA 3 cut(s) 105, 211, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 2 cut(s) 152, 231
Hsp92II CATG 5 cut(s) 45, 169, 247, 389, 563
Kzo9I GATC 2 cut(s) 463, 504
LweI GCATC 2 cut(s) 286, 337
MaeII ACGT 2 cut(s) 152, 231
MaeIII GTNAC 1 cut(s) 268
MalI GATC 2 cut(s) 465, 506
MboI GATC 2 cut(s) 463, 504
MboII GAAGA 6 cut(s) 125, 359, 362, 467, 537, 561
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 2 cut(s) 463, 504
MluCI AATT 2 cut(s) 57, 280
MlyI GAGTC 4 cut(s) 209, 406, 447, 527
MnlI CCTC 9 cut(s) 130, 177, 232, 456, 543, 553, 556, 567, 577
MslI CAYNNNNRTG 2 cut(s) 248, 333
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 2 cut(s) 227, 359
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 311
NdeII GATC 2 cut(s) 463, 504
NlaIII CATG 5 cut(s) 45, 169, 247, 389, 563
NlaIV GGNNCC 1 cut(s) 506
NspI RCATGY 1 cut(s) 247
NspV TTCGAA 1 cut(s) 572
PaeI GCATGC 1 cut(s) 247
PagI TCATGA 1 cut(s) 559
PceI AGGCCT 2 cut(s) 193, 566
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 132, 224
PctI GAATGC 2 cut(s) 227, 359
PkrI GCNGC 2 cut(s) 259, 287
PleI GAGTC 4 cut(s) 209, 406, 446, 526
PpsI GAGTC 4 cut(s) 209, 406, 446, 526
PpuMI RGGWCCY 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PsuI RGATCY 2 cut(s) 463, 504
RsaI GTAC 3 cut(s) 122, 134, 555
RsaNI GTAC 3 cut(s) 121, 133, 554
RseI CAYNNNNRTG 2 cut(s) 248, 333
SatI GCNGC 2 cut(s) 258, 286
Sau3AI GATC 2 cut(s) 463, 504
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 4 cut(s) 209, 406, 447, 527
ScrFI CCNGG 1 cut(s) 311
SfaNI GCATC 2 cut(s) 286, 337
SfcI CTRYAG 2 cut(s) 433, 549
SfuI TTCGAA 1 cut(s) 572
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 2 cut(s) 248, 333
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
SphI GCATGC 1 cut(s) 247
Sse9I AATT 2 cut(s) 57, 280
SseBI AGGCCT 2 cut(s) 193, 566
SsiI CCGC 3 cut(s) 80, 258, 286
StuI AGGCCT 2 cut(s) 193, 566
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 94, 553
TaiI ACGT 2 cut(s) 155, 234
TaqI TCGA 4 cut(s) 182, 331, 521, 572
TasI AATT 2 cut(s) 57, 280
TauI GCSGC 2 cut(s) 260, 288
TscAI CASTG 1 cut(s) 99
TspGWI ACGGA 2 cut(s) 80, 467
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.