Rh5CG226800

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000405
Physical Location & Seq
Forward (+)
23119701 .. 23155970
36270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG226800.1

Sequence Viewer

Length: 693 bp
ATGGCGTTAGAGTTCCGGTCACACAAGGACGGCGCTTGGTACGAAGCCCGTCTACTAACGGAGTACGCCGGCGGTGACCGCCGTCTCAGAATCATGTTCGCCACCTTCTCCGACGAAGAGGACGAGTCGGTCAATGCCAAGGACCTGAACGCTTGGTCGATCGTCTGCGCCGCCCGTTCGTTTCAACCCGACGACCGCCGCTTCTGCGACGCCTTAATCGACAAGGTTGTGAGGAAGAAGCATAGGTATGAGGGAGGAGAGGAAGTGTATACTTGTAGGTTCGTTGTGGAGTGGACTAATGGTCCGGACGTTGGGATTCAAACTACTCTAGCACTTGAGGACATTTGCCGAGTGCAGGCTGTTAAGCTGCCTACTACTGGGACTAGTAGGCCCAGAAAGAGGTTCAAGGCAAGCTCTGCTCTAGGATTCAGCAAGAATACCCCTGCCAAGAGATACTTAGCAGAGATGATTGGCAATCCTTCTGAAAGGAGTGGATCGGATATGACCAAGTTTCAGTCTCATGTAGAGCATTTGTTAGGCCAAGTACGCAGTGAAGAGTCATATACAAGAGGAATCATCATACTGGATAACAAAAGGAATCTTGAAAAGTTGTCCAACTTCTTGGAGAGTCCAGATCGCATCATCATTTCCTCAAGAGGAAGAATGATTCAAGCTAGTAACTTTAGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

230

Amino Acids

26.22

Weight (kDa)

8.64

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 47 9.5e-07 SAWADEE domain
SAWADEE PF16719 48 - 116 2e-10 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccI GTMKAC 2 cut(s) 52, 269
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 5 cut(s) 72, 79, 171, 196, 199
AclWI GGATC 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 41, 65, 546
AfiI CCNNNNNNNGG 4 cut(s) 311, 355, 377, 399
AgsI TTSAA 5 cut(s) 185, 320, 406, 605, 671
AhdI GACNNNNNGTC 1 cut(s) 300
AhlI ACTAGT 1 cut(s) 383
AluBI AGCT 3 cut(s) 367, 414, 674
AluI AGCT 3 cut(s) 367, 414, 674
Alw26I GTCTC 2 cut(s) 89, 522
AlwI GGATC 1 cut(s) 502
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 389, 538
ApeKI GCWGC 1 cut(s) 367
AspLEI GCGC 2 cut(s) 35, 170
AspS9I GGNCC 3 cut(s) 142, 302, 390
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 2 cut(s) 142, 302
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BbvI GCAGC 1 cut(s) 354
BceAI ACGGC 2 cut(s) 46, 66
BcoDI GTCTC 2 cut(s) 89, 522
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 4 cut(s) 329, 384, 422, 675
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 3 cut(s) 171, 199, 368
BlsI GCNGC 3 cut(s) 172, 200, 369
Bme18I GGWCC 2 cut(s) 142, 302
BmeRI GACNNNNNGTC 1 cut(s) 300
BmgT120I GGNCC 3 cut(s) 142, 302, 390
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 648
BmuI ACTGGG 1 cut(s) 387
BoxI GACNNNNGTC 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 356, 637
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 15, 304
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 355, 377, 399
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 382, 588
BseAI TCCGGA 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 311, 355, 377, 399
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 382, 588
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 374
Bsh1285I CGRYCG 2 cut(s) 162, 196
BshFI GGCC 2 cut(s) 391, 540
BsiEI CGRYCG 2 cut(s) 162, 196
BsiSI CCGG 3 cut(s) 16, 69, 305
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 4 cut(s) 311, 355, 377, 399
BsmAI GTCTC 2 cut(s) 89, 522
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 2 cut(s) 391, 540
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 3 cut(s) 159, 494, 634
BspACI CCGC 5 cut(s) 72, 79, 171, 196, 199
BspANI GGCC 2 cut(s) 391, 540
BspCNI CTCAG 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 304
BspPI GGATC 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 382, 588
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 159, 494, 634
BssNAI GTATAC 1 cut(s) 270
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 270
Bst6I CTCTTC 2 cut(s) 111, 549
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 70, 357, 412
BstDEI CTNAG 2 cut(s) 86, 457
BstEII GGTNACC 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 170
BstKTI GATC 3 cut(s) 162, 497, 637
BstMAI GTCTC 2 cut(s) 89, 522
BstMBI GATC 3 cut(s) 159, 494, 634
BstMCI CGRYCG 2 cut(s) 162, 196
BstMWI GCNNNNNNNGC 4 cut(s) 78, 204, 416, 546
BstPAI GACNNNNGTC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 270
BsuRI GGCC 2 cut(s) 391, 540
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 3 cut(s) 70, 357, 412
CfoI GCGC 2 cut(s) 35, 170
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 142, 302, 390
CseI GACGC 1 cut(s) 218
Csp6I GTAC 3 cut(s) 40, 64, 545
CviAII CATG 2 cut(s) 94, 521
CviJI RGCY 7 cut(s) 47, 359, 367, 391, 414, 540, 674
CviKI_1 RGCY 7 cut(s) 47, 359, 367, 391, 414, 540, 674
CviQI GTAC 3 cut(s) 40, 64, 545
DdeI CTNAG 2 cut(s) 86, 457
DpnI GATC 3 cut(s) 161, 496, 636
DpnII GATC 3 cut(s) 159, 494, 634
DrdI GACNNNNNNGTC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 300
DseDI GACNNNNNNGTC 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 111, 549
Eam1105I GACNNNNNGTC 1 cut(s) 300
EarI CTCTTC 2 cut(s) 111, 549
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 142, 302
Eco91I GGTNACC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 2 cut(s) 97, 524
FaiI YATR 9 cut(s) 95, 243, 249, 270, 503, 522, 562, 564, 581
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 93, 520
FblI GTMKAC 2 cut(s) 52, 269
Fnu4HI GCNGC 3 cut(s) 171, 199, 368
Fsp4HI GCNGC 3 cut(s) 171, 199, 368
FspBI CTAG 4 cut(s) 329, 384, 422, 675
GlaI GCGC 2 cut(s) 34, 169
GluI GCNGC 3 cut(s) 171, 199, 368
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 391, 540
HapII CCGG 3 cut(s) 16, 69, 305
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 35, 170
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 97, 524
Hin6I GCGC 2 cut(s) 33, 168
HinP1I GCGC 2 cut(s) 33, 168
HinfI GANTC 9 cut(s) 90, 125, 316, 426, 557, 573, 598, 628, 667
HpaII CCGG 3 cut(s) 16, 69, 305
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 53, 270, 294
Hpy188I TCNGA 4 cut(s) 89, 112, 484, 499
Hpy188III TCNNGA 4 cut(s) 305, 602, 632, 654
Hpy8I GTNNAC 3 cut(s) 53, 270, 294
Hpy99I CGWCG 3 cut(s) 116, 194, 212
HpyAV CCTTC 2 cut(s) 115, 489
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 204, 416, 546
HpyF3I CTNAG 2 cut(s) 86, 457
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 97, 524
HspAI GCGC 2 cut(s) 33, 168
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 159, 494, 634
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 648
MaeI CTAG 4 cut(s) 329, 384, 422, 675
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 18, 74, 677
MalI GATC 3 cut(s) 161, 496, 636
MboI GATC 3 cut(s) 159, 494, 634
MboII GAAGA 4 cut(s) 128, 247, 566, 672
MlyI GAGTC 3 cut(s) 134, 566, 637
MmeI TCCRAC 2 cut(s) 135, 639
MreI CGCCGGCG 1 cut(s) 68
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 2 cut(s) 215, 363
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 3 cut(s) 16, 69, 305
MwoI GCNNNNNNNGC 4 cut(s) 78, 204, 416, 546
NaeI GCCGGC 1 cut(s) 70
NdeII GATC 3 cut(s) 159, 494, 634
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 2 cut(s) 97, 524
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 2 cut(s) 18, 74
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 216
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 6 cut(s) 90, 316, 426, 573, 598, 667
PkrI GCNGC 3 cut(s) 172, 200, 369
Ple19I CGATCG 1 cut(s) 162
PleI GAGTC 3 cut(s) 133, 565, 636
PpsI GAGTC 3 cut(s) 133, 565, 636
PpuMI RGGWCCY 1 cut(s) 142
PshAI GACNNNNGTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 142
PspEI GGTNACC 1 cut(s) 74
PspPI GGNCC 3 cut(s) 142, 302, 390
PspPPI RGGWCCY 1 cut(s) 142
PvuI CGATCG 1 cut(s) 162
RsaI GTAC 3 cut(s) 41, 65, 546
RsaNI GTAC 3 cut(s) 40, 64, 545
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 215, 363
SatI GCNGC 3 cut(s) 171, 199, 368
Sau3AI GATC 3 cut(s) 159, 494, 634
Sau96I GGNCC 3 cut(s) 142, 302, 390
SchI GAGTC 3 cut(s) 134, 566, 637
SfaNI GCATC 1 cut(s) 648
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 2 cut(s) 142, 302
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 335, 652
SmoI CTYRAG 2 cut(s) 335, 652
SpeI ACTAGT 1 cut(s) 383
SsiI CCGC 5 cut(s) 72, 79, 171, 196, 199
SspMI CTAG 4 cut(s) 329, 384, 422, 675
StyI CCWWGG 1 cut(s) 138
TaiI ACGT 1 cut(s) 312
TaqI TCGA 2 cut(s) 158, 219
TaqII GACCGA 1 cut(s) 118
TauI GCSGC 2 cut(s) 173, 201
TfiI GAWTC 6 cut(s) 90, 316, 426, 573, 598, 667
Tru1I TTAA 2 cut(s) 215, 363
Tru9I TTAA 2 cut(s) 215, 363
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 2 cut(s) 18, 74
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 2 cut(s) 18, 74
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 2 cut(s) 142, 302
XmiI GTMKAC 2 cut(s) 52, 269
XspI CTAG 4 cut(s) 329, 384, 422, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.