FvH4_6g40520

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000405
Physical Location & Seq
Forward (+)
32014312 .. 32014847
536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40520.t1

Sequence Viewer

Length: 357 bp
ATGGGCACTGATTCTTTTGAAAGGGATCGACACGACGTCGATATAGGAGGTGTTCCATATGTGGTAATGGTGGAGAACCTTGAGAAGGGGATATCACCGTTTATAATTATGGAATTCATCCATCAGCAAGTTTCAATCTCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGCGTGAGGCATATTCAAGAGCAACCGTCACTGTGAGCAGCAAAAAGAATCAGGACAAGTTGTCTGAGTTTTTGGAGAATCCAAATCACTGCATCGTTTCCTCAGGCGGAAGGCCTTGGGTACTTACTGAGAAATGGCCAGCACATGATATTCCATTGGCTTCAATTCAAGCCCTCATGGCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

119

Amino Acids

13.13

Weight (kDa)

5.46

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AatII GACGTC 1 cut(s) 39
AccII CGCG 1 cut(s) 172
AciI CCGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 2 cut(s) 150, 291
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 5 cut(s) 20, 135, 186, 333, 338
AhdI GACNNNNNGTC 2 cut(s) 35, 229
AlwI GGATC 1 cut(s) 33
AoxI GGCC 2 cut(s) 281, 305
ApeKI GCWGC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 307
BbvI GCAGC 1 cut(s) 219
BccI CCATC 1 cut(s) 129
BfaI CTAG 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 150
BmeRI GACNNNNNGTC 2 cut(s) 35, 229
BmsI GCATC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 3 cut(s) 225, 285, 288
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 283, 307
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 2 cut(s) 283, 307
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 276
BspANI GGCC 2 cut(s) 283, 307
BspCNI CTCAG 3 cut(s) 226, 284, 289
BspFNI CGCG 1 cut(s) 172
BspPI GGATC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 99, 196, 202
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 234, 271, 297
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 283, 307
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 6, 198, 256
Cac8I GCNNGC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 149, 290
CviAII CATG 3 cut(s) 141, 314, 346
CviJI RGCY 5 cut(s) 283, 307, 329, 341, 350
CviKI_1 RGCY 5 cut(s) 283, 307, 329, 341, 350
CviQI GTAC 2 cut(s) 149, 290
DdeI CTNAG 3 cut(s) 234, 271, 297
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DriI GACNNNNNGTC 2 cut(s) 35, 229
EaeI YGGCCR 1 cut(s) 305
Eam1105I GACNNNNNGTC 2 cut(s) 35, 229
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 283
Eco32I GATATC 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 113
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 144, 317, 349
FaiI YATR 9 cut(s) 44, 58, 60, 104, 110, 142, 181, 315, 347
FatI CATG 3 cut(s) 140, 313, 345
FauNDI CATATG 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 208
FspBI CTAG 1 cut(s) 355
GluI GCNGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 283, 307
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 144, 317, 349
HinfI GANTC 3 cut(s) 11, 217, 247
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 186, 221
Hpy99I CGWCG 2 cut(s) 38, 41
HpyAV CCTTC 2 cut(s) 79, 273
HpyCH4III ACNGT 3 cut(s) 99, 196, 202
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 3 cut(s) 234, 271, 297
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 144, 317, 349
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 206, 258, 321
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 355
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 3 cut(s) 105, 113, 333
MluNI TGGCCA 1 cut(s) 307
MnlI CCTC 4 cut(s) 41, 169, 280, 353
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
Msp20I TGGCCA 1 cut(s) 307
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeI CATATG 1 cut(s) 58
NdeII GATC 1 cut(s) 25
NlaIII CATG 3 cut(s) 144, 317, 349
NmuCI GTSAC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 283
PfeI GAWTC 3 cut(s) 11, 217, 247
PkrI GCNGC 1 cut(s) 209
PsiI TTATAA 1 cut(s) 104
RsaI GTAC 2 cut(s) 150, 291
RsaNI GTAC 2 cut(s) 149, 290
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 1 cut(s) 25
ScaI AGTACT 1 cut(s) 150
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 39, 52, 81
SfaNI GCATC 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 3 cut(s) 105, 113, 333
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 355
StuI AGGCCT 1 cut(s) 283
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 3 cut(s) 99, 196, 202
TaiI ACGT 1 cut(s) 39
TaqI TCGA 2 cut(s) 28, 39
TasI AATT 3 cut(s) 105, 113, 333
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 3 cut(s) 11, 217, 247
TscAI CASTG 3 cut(s) 13, 205, 263
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 3 cut(s) 13, 205, 263
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 1 cut(s) 113
XspI CTAG 1 cut(s) 355
ZraI GACGTC 1 cut(s) 37
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.