Rmu_co8060268.1_g000001

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8060268.1
OG0000405
Physical Location & Seq
Reverse (-)
1 .. 568
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8060268.1_g000001.1.cds

Sequence Viewer

Length: 272 bp
cgtggtaccacgtccgaatagagacgaacggtgacggcggggatcgactgagagtcaagttcgtcggcttctccgacgatcacgacgaggtttatgacaccgaggagttgacgtcgtttagagacgtggaggagtttaggtcgaggttcaggcgtatgtcgattcaggttcaagactgggagtgcagaaaggtggtgaaggggacggtcgtgtgtgccgccatttcaattggccccgacgactgccgcttctacgacgccgttgttgatcgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

90

Amino Acids

10.6

Weight (kDa)

4.93

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 3 cut(s) 38, 218, 246
AclWI GGATC 1 cut(s) 50
AcyI GRCGYC 2 cut(s) 112, 257
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 2 cut(s) 172, 227
AhdI GACNNNNNGTC 1 cut(s) 52
AjiI CACGTC 2 cut(s) 12, 126
Alw26I GTCTC 2 cut(s) 16, 116
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 231
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 43, 207
BanI GGYRCC 1 cut(s) 5
BceAI ACGGC 2 cut(s) 51, 244
BcoDI GTCTC 2 cut(s) 16, 116
BisI GCNGC 2 cut(s) 218, 246
BlsI GCNGC 2 cut(s) 219, 247
BmeRI GACNNNNNGTC 1 cut(s) 52
BmgBI CACGTC 2 cut(s) 12, 126
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 7, 234
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BsaHI GRCGYC 2 cut(s) 112, 257
BsaJI CCNNGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 4 cut(s) 97, 124, 127, 154
Bse1I ACTGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 2 cut(s) 118, 145
BsgI GTGCAG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 16, 116
BsmBI CGTCTC 2 cut(s) 16, 116
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 42, 78, 267
BspACI CCGC 3 cut(s) 38, 218, 246
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 7, 234
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 3 cut(s) 42, 78, 267
BssNI GRCGYC 2 cut(s) 112, 257
Bst4CI ACNGT 2 cut(s) 31, 207
BstACI GRCGYC 2 cut(s) 112, 257
BstDEI CTNAG 1 cut(s) 49
BstKTI GATC 3 cut(s) 45, 81, 270
BstMAI GTCTC 2 cut(s) 16, 116
BstMBI GATC 3 cut(s) 42, 78, 267
BstMCI CGRYCG 1 cut(s) 209
BsuRI GGCC 1 cut(s) 233
BtrI CACGTC 2 cut(s) 12, 126
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 2 cut(s) 68, 233
CviKI_1 RGCY 2 cut(s) 68, 233
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 49
DpnI GATC 3 cut(s) 44, 80, 269
DpnII GATC 3 cut(s) 42, 78, 267
DriI GACNNNNNGTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 52
Esp3I CGTCTC 2 cut(s) 16, 116
FaiI YATR 2 cut(s) 95, 157
FaqI GGGAC 1 cut(s) 216
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 218, 246
Fsp4HI GCNGC 2 cut(s) 218, 246
GluI GCNGC 2 cut(s) 218, 246
HaeIII GGCC 1 cut(s) 233
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 2 cut(s) 112, 257
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 2 cut(s) 53, 162
HphI GGTGA 2 cut(s) 43, 207
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 16, 75
Hpy188III TCNNGA 2 cut(s) 82, 172
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 6 cut(s) 67, 79, 88, 117, 241, 259
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 31, 207
HpyCH4IV ACGT 3 cut(s) 11, 112, 125
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 3 cut(s) 11, 112, 125
Hsp92I GRCGYC 2 cut(s) 112, 257
KpnI GGTACC 1 cut(s) 9
Kzo9I GATC 3 cut(s) 42, 78, 267
LpnPI CCDG 3 cut(s) 135, 151, 162
MaeII ACGT 3 cut(s) 11, 112, 125
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 44, 80, 269
MboI GATC 3 cut(s) 42, 78, 267
MfeI CAATTG 1 cut(s) 227
MluCI AATT 1 cut(s) 227
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 4 cut(s) 81, 96, 123, 137
MunI CAATTG 1 cut(s) 227
NdeII GATC 3 cut(s) 42, 78, 267
NlaIV GGNNCC 2 cut(s) 7, 234
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 83
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 219, 247
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 7, 234
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 2 cut(s) 218, 246
Sau3AI GATC 3 cut(s) 42, 78, 267
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 62
SetI ASST 8 cut(s) 14, 92, 115, 128, 142, 148, 170, 194
Sse9I AATT 1 cut(s) 227
SsiI CCGC 3 cut(s) 38, 218, 246
TaaI ACNGT 2 cut(s) 31, 207
TaiI ACGT 3 cut(s) 14, 115, 128
TaqI TCGA 3 cut(s) 45, 142, 160
TasI AATT 1 cut(s) 227
TauI GCSGC 2 cut(s) 220, 248
TfiI GAWTC 1 cut(s) 162
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
ZraI GACGTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.