RLG00000020863

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000405
Physical Location & Seq
Forward (+)
69633750 .. 69635247
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020863

Sequence Viewer

Length: 372 bp
ATGGTGGAAAATCTTGAGAAGGGGATATCACCATTTACAATTATGGAATTTATCCATCAGCAAGTTTCAATATCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGTCGGAGGCATATACAAGAGGAACCATCACTGTGAACAGCAAAAAGAATCTGGACAAGTTGTCTGAGTTTTTGGAGAATCCAGATCACAGCATCATTTCTTCAAAGGGAAGGCCTTGGGTAATTACTGAGAAATGGCTAGCACATGATATTTCATTGGCTTCAATTCAAGCCTTCCTTGCTAACTATCAGACTATAAGAGATGTGAAGTTCTTAAAGACTAGTTCCTGGGGCAATGTTAGTGTTGCATCTGAAGGTTATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

5.55

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 47
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 4 cut(s) 69, 207, 267, 272
AhdI GACNNNNNGTC 1 cut(s) 163
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 329
AoxI GGCC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 21
AsuNHI GCTAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 63, 137
BciT130I CCWGG 1 cut(s) 331
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 242, 324
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 331
BmeRI GACNNNNNGTC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 204, 359
BmtI GCTAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 218, 330
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 218, 330
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 159, 222
BshFI GGCC 1 cut(s) 217
BsnI GGCC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 187
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 160, 223
BspLI GGNNCC 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 218, 330
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 168, 231
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 329
BsuRI GGCC 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 75, 248
CviJI RGCY 4 cut(s) 217, 241, 263, 275
CviKI_1 RGCY 4 cut(s) 217, 241, 263, 275
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 168, 231
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DriI GACNNNNNGTC 1 cut(s) 163
Eam1105I GACNNNNNGTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 217
Eco32I GATATC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 329
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 2 cut(s) 78, 251
FaiI YATR 7 cut(s) 44, 76, 115, 117, 249, 299, 363
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 2 cut(s) 74, 247
FspBI CTAG 2 cut(s) 242, 324
HaeIII GGCC 1 cut(s) 217
Hin1II CATG 2 cut(s) 78, 251
HinfI GANTC 2 cut(s) 151, 181
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 109, 169, 294, 355
Hpy188III TCNNGA 3 cut(s) 14, 155, 185
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 13, 207, 286, 350
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 168, 231
Hsp92II CATG 2 cut(s) 78, 251
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 4 cut(s) 140, 198, 316, 343
LweI GCATC 2 cut(s) 204, 359
MaeI CTAG 2 cut(s) 242, 324
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 195
MluCI AATT 4 cut(s) 39, 47, 225, 267
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 103, 116
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 187
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 78, 251
NlaIV GGNNCC 1 cut(s) 127
PceI AGGCCT 1 cut(s) 217
PfeI GAWTC 2 cut(s) 151, 181
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 127
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 317
Sau3AI GATC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 331
SetI ASST 1 cut(s) 361
SfaNI GCATC 2 cut(s) 204, 359
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 4 cut(s) 39, 47, 225, 267
SseBI AGGCCT 1 cut(s) 217
SspMI CTAG 2 cut(s) 242, 324
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 136
TasI AATT 4 cut(s) 39, 47, 225, 267
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 2 cut(s) 151, 181
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 47
XspI CTAG 2 cut(s) 242, 324
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.