RchiOBHm_Chr5g0029431

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000405
Physical Location & Seq
Forward (+)
23066975 .. 23068496
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30881

Sequence Viewer

Length: 249 bp
ATGTGGAGAATGTTGAGAAGGGGATATCACCGGTTACAATTATGCAATTTCTATATCAGCAAGTTTCAGTCTCATGTAGAGCATTTGTTATGCCAAGTACGTAGTCAAGAGTCATATACAAGAGGAATCATCATACTGGATAACAAAAGGAATCTTGAAAAGTTGTCCAACTTCTTGGAGAGTCCAGATCGCATCATCATTTCCTCAAGAGGAAGGTATATCTTGTGTCAATTGCTTTTATTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

82

Amino Acids

9.97

Weight (kDa)

9.72

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 75
AsiGI ACCGGT 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 247
BmsI GCATC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 141
BshTI ACCGGT 1 cut(s) 30
BsiSI CCGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 30
BssMI GATC 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 101
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 30
Csp6I GTAC 1 cut(s) 98
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 1 cut(s) 74
CviQI GTAC 1 cut(s) 98
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 101
Eco32I GATATC 1 cut(s) 26
EcoRV GATATC 1 cut(s) 26
FaeI CATG 1 cut(s) 77
FaiI YATR 8 cut(s) 43, 54, 75, 91, 115, 117, 134, 219
FatI CATG 1 cut(s) 73
FspBI CTAG 1 cut(s) 247
HapII CCGG 1 cut(s) 31
Hin1II CATG 1 cut(s) 77
HinfI GANTC 4 cut(s) 110, 126, 151, 181
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 20
Hpy188III TCNNGA 4 cut(s) 107, 155, 185, 207
HpyAV CCTTC 2 cut(s) 12, 207
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 3 cut(s) 44, 122, 198
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 247
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 33
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MfeI CAATTG 1 cut(s) 230
MluCI AATT 3 cut(s) 38, 46, 230
MlyI GAGTC 2 cut(s) 119, 190
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 3 cut(s) 116, 203, 214
MspI CCGG 1 cut(s) 31
MunI CAATTG 1 cut(s) 230
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 77
PfeI GAWTC 2 cut(s) 126, 151
PinAI ACCGGT 1 cut(s) 30
PleI GAGTC 2 cut(s) 118, 189
PpsI GAGTC 2 cut(s) 118, 189
Ppu21I YACGTR 1 cut(s) 101
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 2 cut(s) 119, 190
SetI ASST 2 cut(s) 103, 218
SfaNI GCATC 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SnaBI TACGTA 1 cut(s) 101
Sse9I AATT 3 cut(s) 38, 46, 230
SspMI CTAG 1 cut(s) 247
TaiI ACGT 1 cut(s) 103
TasI AATT 3 cut(s) 38, 46, 230
TfiI GAWTC 2 cut(s) 126, 151
XspI CTAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.