Rorug02G0449900

SAWADEE domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
57721201 .. 57721683
483 bp
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UTR
Exon/CDS
Intron
Rorug02G0449900.1

Sequence Viewer

Length: 483 bp
ATGGATGGGGCATCATCAAGCAGCTCTCATCCTAATATTTCTGATGATCATCATTTGGTTGATGATTTCTACTTCTCAGCTCTACATGATGACCAAGAAGTATTTCCCATCTCTGATGAGAAATATGCCCAAGAGTTGCAGCTTCAAGAGGCCCTCATGTCCTCTGCACTCTCTTTCAGAGTCCCAATTAGTAATGAACAAGTTGCAGTGGAAACACCCTTTGAAATACTAAAGGGACAATCTTCTAGCTCTGGAAGTTTCTGCATGATCTGTATGGATGTGAAGCCAAGTGGAGAAATGTTCACAAACAATGGCTGCAACCACTCATTCTGCACCGATTGCATTGGAAGGTATGTTGGGACTAAGATTCAGGAGAGCATTTCAATGGTGAAGTGTCCTGATGTGAAATGCAAAGGGGTATTGGAGCCAGTGGCGGACGCACAGTGGGACGAGTGGGGGCAGCTGCCCCCACTGAGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

17.65

Weight (kDa)

4.39

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 434
AgsI TTSAA 3 cut(s) 146, 224, 384
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 6 cut(s) 24, 80, 142, 249, 463, 477
AluI AGCT 6 cut(s) 24, 80, 142, 249, 463, 477
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 5 cut(s) 21, 139, 315, 460, 463
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 400
BbvI GCAGC 5 cut(s) 33, 151, 302, 450, 472
BccI CCATC 1 cut(s) 116
BclI TGATCA 1 cut(s) 46
BfaI CTAG 1 cut(s) 246
BisI GCNGC 5 cut(s) 22, 140, 316, 461, 464
BlsI GCNGC 5 cut(s) 23, 141, 317, 462, 465
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 426
BmsI GCATC 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 428
Bse8I GATNNNNATC 1 cut(s) 48
BseGI GGATG 3 cut(s) 10, 28, 283
BseJI GATNNNNATC 1 cut(s) 48
BseMII CTCAG 2 cut(s) 90, 464
BseNI ACTGG 1 cut(s) 428
BseXI GCAGC 5 cut(s) 33, 151, 302, 450, 472
BsgI GTGCAG 2 cut(s) 150, 316
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 4 cut(s) 167, 249, 373, 461
BsmFI GGGAC 4 cut(s) 167, 249, 373, 461
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 46, 267
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 89, 465
BspLI GGNNCC 1 cut(s) 426
BsrI ACTGG 1 cut(s) 428
BssMI GATC 2 cut(s) 46, 267
Bst4CI ACNGT 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 339
BstDEI CTNAG 3 cut(s) 76, 363, 473
BstF5I GGATG 3 cut(s) 10, 28, 283
BstKTI GATC 2 cut(s) 49, 270
BstMBI GATC 2 cut(s) 46, 267
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstV1I GCAGC 5 cut(s) 33, 151, 302, 450, 472
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 3 cut(s) 10, 28, 283
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 4 cut(s) 213, 435, 449, 470
Cfr13I GGNCC 1 cut(s) 151
CseI GACGC 1 cut(s) 446
CviAII CATG 3 cut(s) 86, 157, 265
DdeI CTNAG 3 cut(s) 76, 363, 473
DpnI GATC 2 cut(s) 48, 269
DpnII GATC 2 cut(s) 46, 267
EciI GGCGGA 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 151
FaeI CATG 3 cut(s) 89, 160, 268
FaiI YATR 6 cut(s) 87, 126, 158, 266, 275, 354
FaqI GGGAC 4 cut(s) 167, 249, 373, 461
FatI CATG 3 cut(s) 85, 156, 264
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 22, 140, 316, 461, 464
FokI GGATG 3 cut(s) 15, 17, 290
Fsp4HI GCNGC 5 cut(s) 22, 140, 316, 461, 464
FspBI CTAG 1 cut(s) 246
GluI GCNGC 5 cut(s) 22, 140, 316, 461, 464
HaeIII GGCC 1 cut(s) 152
HgaI GACGC 1 cut(s) 446
Hin1II CATG 3 cut(s) 89, 160, 268
HinfI GANTC 2 cut(s) 180, 367
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 43, 115, 179
Hpy188III TCNNGA 4 cut(s) 146, 252, 371, 398
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4V TGCA 8 cut(s) 139, 167, 206, 264, 318, 333, 342, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 3 cut(s) 76, 363, 473
Hsp92II CATG 3 cut(s) 89, 160, 268
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 267
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 4 cut(s) 237, 356, 411, 441
Lsp1109I GCAGC 5 cut(s) 33, 151, 302, 450, 472
LweI GCATC 1 cut(s) 20
MaeI CTAG 1 cut(s) 246
MalI GATC 2 cut(s) 48, 269
MboI GATC 2 cut(s) 46, 267
MboII GAAGA 1 cut(s) 234
MluCI AATT 1 cut(s) 186
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 3 cut(s) 142, 164, 172
MroXI GAANNNNTTC 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 463
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 2 cut(s) 46, 267
NlaIII CATG 3 cut(s) 89, 160, 268
NlaIV GGNNCC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 5 cut(s) 23, 141, 317, 462, 465
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 383
SatI GCNGC 5 cut(s) 22, 140, 316, 461, 464
Sau3AI GATC 2 cut(s) 46, 267
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 189
SetI ASST 7 cut(s) 26, 82, 144, 251, 353, 465, 479
SfaNI GCATC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 1 cut(s) 186
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 37
SspMI CTAG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 444
TasI AATT 1 cut(s) 186
TfiI GAWTC 1 cut(s) 367
TscAI CASTG 4 cut(s) 213, 435, 449, 477
TseI GCWGC 5 cut(s) 21, 139, 315, 460, 463
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 4 cut(s) 213, 435, 449, 477
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.