Rroxscaffold_2G00093500

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000405
Physical Location & Seq
Reverse (-)
14848951 .. 14851299
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093500.1

Sequence Viewer

Length: 567 bp
ATGAGTAATAGTACTTATGAAAGTTCTTCTGAAATGGATCGACACGATGTGGATATTGGAGGGGTTCCCTATGTAGTAATGGTGGAAAATCTTGAGAAGGGGATATCACCATTTACAATTATGGCATTTATCCATCAGCAAGTTTCAATATCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGTCGGAGGCATATACAAGAGGAACCATCACTGTGAACAGCAAAAAAAATCTGGACAAGTTGTCTGAGTTTTTGGAGAATCCAAATCACAGCATCATTTCTTCAAAGGGAAGGCCTTGGGTAATTACTGAGAAATGGCTAGCACATGATATTTCATTGGCTTCAATTCAAGCCTTCATTGCTAACTATCAGACTATGTTGAGGAGTAGAAAAATTGAAACTAGCAATGAATTGAAGGTTGTCCTCTCTGGAACTGAAGAATTCAACACAGCTATGCTGCTGAAGAATTTATTTTGGGAATTTGTTAATCATCAAGCTCGACTTCACCAGAGGTTACTTACTGAAGAGGCAAAGATCTCTCAGCTATTTGATGCAGAAGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

188

Amino Acids

21.34

Weight (kDa)

5.51

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 3 cut(s) 440, 466, 479
AcuI CTGAAG 3 cut(s) 456, 482, 543
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 2 cut(s) 13, 162
AgsI TTSAA 7 cut(s) 147, 285, 345, 350, 398, 415, 445
AhdI GACNNNNNGTC 1 cut(s) 241
AluBI AGCT 3 cut(s) 452, 497, 544
AluI AGCT 3 cut(s) 452, 497, 544
AlwI GGATC 1 cut(s) 45
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 3 cut(s) 440, 466, 479
AsuHPI GGTGA 2 cut(s) 99, 497
AsuNHI GCTAGC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 444
BccI CCATC 2 cut(s) 141, 215
BfaI CTAG 2 cut(s) 320, 402
BglII AGATCT 2 cut(s) 534, 561
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
BmcAI AGTACT 2 cut(s) 13, 162
BmeRI GACNNNNNGTC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 66, 205
BmsI GCATC 2 cut(s) 282, 541
BmtI GCTAGC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 357, 412
BseDI CCNNGG 1 cut(s) 296
BseMI GCAATG 2 cut(s) 357, 412
BseMII CTCAG 3 cut(s) 237, 300, 554
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 444
BshFI GGCC 1 cut(s) 295
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 3 cut(s) 37, 534, 561
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 3 cut(s) 238, 301, 553
BspLI GGNNCC 2 cut(s) 66, 205
BspOI GCTAGC 1 cut(s) 323
BspPI GGATC 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 357, 412
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 3 cut(s) 37, 534, 561
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 519, 552
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 3 cut(s) 246, 309, 540
BstKTI GATC 3 cut(s) 40, 537, 564
BstMBI GATC 3 cut(s) 37, 534, 561
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 534, 561
BstYI RGATCY 2 cut(s) 534, 561
BsuRI GGCC 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 321
Csp6I GTAC 2 cut(s) 12, 161
CviAII CATG 2 cut(s) 153, 326
CviJI RGCY 7 cut(s) 295, 319, 341, 353, 452, 497, 544
CviKI_1 RGCY 7 cut(s) 295, 319, 341, 353, 452, 497, 544
CviQI GTAC 2 cut(s) 12, 161
DdeI CTNAG 3 cut(s) 246, 309, 540
DpnI GATC 3 cut(s) 39, 536, 563
DpnII GATC 3 cut(s) 37, 534, 561
DraIII CACNNNGTG 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 519, 552
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 2 cut(s) 519, 552
Eco130I CCWWGG 1 cut(s) 296
Eco147I AGGCCT 1 cut(s) 295
Eco32I GATATC 1 cut(s) 105
Eco57I CTGAAG 3 cut(s) 456, 482, 543
EcoRI GAATTC 1 cut(s) 440
EcoRV GATATC 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 2 cut(s) 156, 329
FaiI YATR 9 cut(s) 18, 72, 122, 154, 193, 195, 327, 377, 455
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 2 cut(s) 152, 325
Fnu4HI GCNGC 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 458
FspBI CTAG 2 cut(s) 320, 402
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 1 cut(s) 295
Hin1II CATG 2 cut(s) 156, 329
HinfI GANTC 1 cut(s) 259
HphI GGTGA 2 cut(s) 99, 497
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 5 cut(s) 31, 187, 247, 372, 566
Hpy188III TCNNGA 3 cut(s) 92, 233, 429
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 4 cut(s) 91, 285, 364, 409
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 3 cut(s) 246, 309, 540
Hsp92II CATG 2 cut(s) 156, 329
Kzo9I GATC 3 cut(s) 37, 534, 561
LpnPI CCDG 3 cut(s) 218, 414, 521
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 2 cut(s) 282, 541
MaeI CTAG 2 cut(s) 320, 402
MaeIII GTNAC 1 cut(s) 513
MalI GATC 3 cut(s) 39, 536, 563
MboI GATC 3 cut(s) 37, 534, 561
MboII GAAGA 5 cut(s) 18, 273, 449, 475, 536
MflI RGATCY 2 cut(s) 534, 561
MluCI AATT 8 cut(s) 117, 303, 345, 393, 410, 440, 466, 479
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 7 cut(s) 53, 181, 194, 375, 434, 504, 520
MseI TTAA 1 cut(s) 486
MslI CAYNNNNRTG 2 cut(s) 212, 452
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 3 cut(s) 37, 534, 561
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 2 cut(s) 156, 329
NlaIV GGNNCC 2 cut(s) 66, 205
PceI AGGCCT 1 cut(s) 295
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 66, 205
PsuI RGATCY 2 cut(s) 534, 561
RsaI GTAC 2 cut(s) 13, 162
RsaNI GTAC 2 cut(s) 12, 161
RseI CAYNNNNRTG 2 cut(s) 212, 452
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 3 cut(s) 37, 534, 561
ScaI AGTACT 2 cut(s) 13, 162
SetI ASST 5 cut(s) 420, 454, 499, 515, 546
SfaNI GCATC 2 cut(s) 282, 541
SmiMI CAYNNNNRTG 2 cut(s) 212, 452
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 8 cut(s) 117, 303, 345, 393, 410, 440, 466, 479
SseBI AGGCCT 1 cut(s) 295
SspMI CTAG 2 cut(s) 320, 402
StuI AGGCCT 1 cut(s) 295
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 40, 499
TasI AATT 8 cut(s) 117, 303, 345, 393, 410, 440, 466, 479
TatI WGTACW 2 cut(s) 11, 160
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 4 cut(s) 33, 324, 346, 423
TspRI CASTG 1 cut(s) 217
XapI RAATTY 3 cut(s) 440, 466, 479
XspI CTAG 2 cut(s) 320, 402
ZrmI AGTACT 2 cut(s) 13, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.