Rh2DG386100

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000405
Physical Location & Seq
Reverse (-)
55862449 .. 55862742
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG386100.1

Sequence Viewer

Length: 294 bp
ATGGAAATGGAGTTCAGGTCTGGAGTGGACGACGCATGGTATGCCGTCAAAATTTTGACGGAAGGCAATAGTGCGGAACGGCTAAGAGTGAAGTTTTGCAACTTTGAAGACGAGTACGACGAGGTGTACGAGGCCAAGGACCTAACGTCAGCTAACCACGTACATGACGAACTTCCTATCGAGGTTCAGGCCTGTGTCTATTCAGGTGCAGGACTCGGAATGCCCGAACGTGGTGGAGGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGACAATTGCCGCTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

4.96

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 48 2.4e-08 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 74, 256, 284
AcsI RAATTY 1 cut(s) 51
AfaI GTAC 3 cut(s) 116, 128, 162
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 107
AhdI GACNNNNNGTC 1 cut(s) 145
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AoxI GGCC 2 cut(s) 132, 189
ApoI RAATTY 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 139
AvaII GGWCC 1 cut(s) 139
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 114
BceAI ACGGC 3 cut(s) 29, 95, 243
BisI GCNGC 2 cut(s) 256, 284
BlsI GCNGC 2 cut(s) 257, 285
Bme18I GGWCC 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 2 cut(s) 134, 191
BslI CCNNNNNNNGG 1 cut(s) 230
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 2 cut(s) 134, 191
BspACI CCGC 3 cut(s) 74, 256, 284
BspANI GGCC 2 cut(s) 134, 191
BssECI CCNNGG 1 cut(s) 135
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 134, 191
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 115, 127, 161
CviAII CATG 3 cut(s) 36, 164, 242
CviJI RGCY 4 cut(s) 82, 134, 152, 191
CviKI_1 RGCY 4 cut(s) 82, 134, 152, 191
CviQI GTAC 3 cut(s) 115, 127, 161
DdeI CTNAG 1 cut(s) 83
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 3 cut(s) 39, 167, 245
FaiI YATR 5 cut(s) 37, 42, 165, 243, 292
FatI CATG 3 cut(s) 35, 163, 241
Fnu4HI GCNGC 2 cut(s) 256, 284
Fsp4HI GCNGC 2 cut(s) 256, 284
GluI GCNGC 2 cut(s) 256, 284
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 134, 191
HgaI GACGC 1 cut(s) 41
Hin1II CATG 3 cut(s) 39, 167, 245
HinfI GANTC 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 28, 127
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 2 cut(s) 28, 127
Hpy99I CGWCG 2 cut(s) 35, 122
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 3 cut(s) 146, 159, 229
HpyCH4V TGCA 2 cut(s) 99, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 3 cut(s) 146, 159, 229
Hsp92II CATG 3 cut(s) 39, 167, 245
LpnPI CCDG 5 cut(s) 6, 173, 189, 195, 205
MaeII ACGT 3 cut(s) 146, 159, 229
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 1 cut(s) 119
MfeI CAATTG 1 cut(s) 278
MluCI AATT 2 cut(s) 51, 278
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 4 cut(s) 115, 124, 175, 230
MslI CAYNNNNRTG 2 cut(s) 162, 246
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 39, 167, 245
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PceI AGGCCT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 4 cut(s) 117, 126, 165, 222
PctI GAATGC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 257, 285
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
Ppu21I YACGTR 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 116, 128, 162
RsaNI GTAC 3 cut(s) 115, 127, 161
RseI CAYNNNNRTG 2 cut(s) 162, 246
SatI GCNGC 2 cut(s) 256, 284
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 207
SetI ASST 9 cut(s) 20, 126, 144, 149, 154, 162, 186, 208, 232
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 162, 246
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 51, 278
SseBI AGGCCT 1 cut(s) 191
SsiI CCGC 3 cut(s) 74, 256, 284
StuI AGGCCT 1 cut(s) 191
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 3 cut(s) 149, 162, 232
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 51, 278
TauI GCSGC 2 cut(s) 258, 286
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.