MD09G1128900.v1.1

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000405
Physical Location & Seq
Reverse (-)
9953229 .. 9957309
4081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1128900.v1.1.491

Sequence Viewer

Length: 393 bp
ATGATTCATAAAATCCATGTGGTGCATGAGGAACATCAGTTTGTAAAAGGAGAAGAAGAATGTTCATGCAGCCTCATCCTCTTTTGGAGACATGGTCCAAAAGCAGGGTCTTTAACGGCTCAATCTCTTGATACCATTTGCAGAGTCCAGCCTCGTACAAACAAAATGCATCCGCTTTTGAACTCTTTTCTAAAAACAGCCAGGGAGAAAATTGAAACCACTCTTTCTAATATTTCTGCAATTCCTCGTGATATTGCTTATGACACAAAAACTTGTATGTCCAACTATAGGCACAAGTTAAGCATTTCTCTAAGTATAAACCAGGCAAGTTTATTTAGTGTATATGTTTTCCTATTTGGGTTGAGTTTCTTATGTAGAGTTTTGTGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

131

Amino Acids

14.85

Weight (kDa)

9.0

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 104, 288
AgsI TTSAA 2 cut(s) 181, 215
AjnI CCWGG 2 cut(s) 200, 321
Alw26I GTCTC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BauI CACGAG 1 cut(s) 246
BbvI GCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 202, 323
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 202, 323
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 202, 323
BmsI GCATC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 288
BseBI CCWGG 2 cut(s) 202, 323
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 75, 169
BseLI CCNNNNNNNGG 2 cut(s) 104, 288
BseXI GCAGC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 104, 288
BsmAI GTCTC 1 cut(s) 82
BspACI CCGC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 201
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 202, 323
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 75, 169
BstMAI GTCTC 1 cut(s) 82
BstNI CCWGG 2 cut(s) 202, 323
BstSCI CCNGG 2 cut(s) 200, 321
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 75, 169
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 156
CviAII CATG 4 cut(s) 17, 26, 66, 92
CviJI RGCY 4 cut(s) 72, 119, 151, 200
CviKI_1 RGCY 4 cut(s) 72, 119, 151, 200
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 200, 321
EcoT22I ATGCAT 1 cut(s) 171
FaeI CATG 4 cut(s) 20, 29, 69, 95
FatI CATG 4 cut(s) 16, 25, 65, 91
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 2 cut(s) 62, 156
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 20, 29, 69, 95
HinfI GANTC 2 cut(s) 4, 144
Hpy188III TCNNGA 2 cut(s) 128, 248
HpyCH4V TGCA 6 cut(s) 25, 69, 141, 169, 239, 387
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 4 cut(s) 20, 29, 69, 95
LpnPI CCDG 6 cut(s) 90, 161, 187, 214, 308, 335
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 65, 68
MluCI AATT 2 cut(s) 210, 240
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 5 cut(s) 22, 83, 89, 162, 255
Mph1103I ATGCAT 1 cut(s) 171
MseI TTAA 3 cut(s) 113, 299, 391
MspR9I CCNGG 2 cut(s) 202, 323
MvaI CCWGG 2 cut(s) 202, 323
NlaIII CATG 4 cut(s) 20, 29, 69, 95
NsiI ATGCAT 1 cut(s) 171
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 200, 321
PspGI CCWGG 2 cut(s) 200, 321
PspPI GGNCC 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 93
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 3 cut(s) 113, 299, 391
SatI GCNGC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 2 cut(s) 202, 323
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 95
Sse9I AATT 2 cut(s) 210, 240
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 200, 321
TasI AATT 2 cut(s) 210, 240
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 113, 299, 391
Tru9I TTAA 3 cut(s) 113, 299, 391
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 95
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.