Rroxscaffold_3G00246280

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000405
Physical Location & Seq
Forward (+)
39351153 .. 39354940
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246280.1

Sequence Viewer

Length: 600 bp
ATGGATTTGGAGTTCAGGTCGTGCGAGGACGACGCGTGGTACCACGTCCGAATAGAGACGGACGGTGACGGCGGGGATCGACTGAGAGTCAAGTTCGTCGGCTTCTCCGACGATCACGACGAGGTTTATGACGCCGAGGAGTTGACGTCGTTTAGAGACGTGAAGGAGTTTAGGTCGAGGTTCAGGCGTATGTCGATTCAGGTTCAAGACTGGGAGTGCAGAAAGGTGGTGAAGGGGACGGTCGTGTGTGCCGCCATTTCAATTGGCCCCGACGACTGCCGCTTCTACGACGCCGTTGTTGATCGGGTGGTACATAAGGAACATCGGCTCGTAAAAGGAAAAGAAGAATGCTCATGCAACTTCATCCTATTTTGGAGACACGGTCCAAAGGCTCGATCATTAACTGCTCAAATTCTTGAAAACATTTGCAAAGTGCAACCTCATGTGGACAAATTAGATCCGCTGCTGACCACTTTTCTTGACACAGCAACGGAAAAAATAGAAACCATTCTTTCCAGTATTTTCAAAGTTCCTCGTGAAGCTTCTCATCACGAGAGAACCTTGTACGCCCAATTGCGGGGAAGAGCTAAGCTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

199

Amino Acids

23.2

Weight (kDa)

6.25

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 143 7.3e-33 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 39
AccII CGCG 1 cut(s) 35
AciI CCGC 5 cut(s) 72, 252, 280, 461, 577
AclWI GGATC 2 cut(s) 84, 452
AcsI RAATTY 1 cut(s) 411
AcyI GRCGYC 3 cut(s) 132, 146, 291
AfaI GTAC 3 cut(s) 41, 312, 566
AfiI CCNNNNNNNGG 2 cut(s) 576, 577
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 4 cut(s) 206, 261, 419, 526
AhdI GACNNNNNGTC 1 cut(s) 86
AjiI CACGTC 2 cut(s) 46, 160
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 542, 587, 592
AluI AGCT 3 cut(s) 542, 587, 592
Alw26I GTCTC 3 cut(s) 50, 150, 370
AlwI GGATC 2 cut(s) 84, 452
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 507
Asp718I GGTACC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 266, 383
AsuHPI GGTGA 2 cut(s) 77, 241
AvaII GGWCC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 39
BauI CACGAG 2 cut(s) 534, 551
BbvI GCAGC 1 cut(s) 450
BceAI ACGGC 2 cut(s) 85, 278
BcoDI GTCTC 3 cut(s) 50, 150, 370
BisI GCNGC 3 cut(s) 252, 280, 464
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 3 cut(s) 253, 281, 465
Bme18I GGWCC 1 cut(s) 383
BmeRI GACNNNNNGTC 1 cut(s) 86
BmgBI CACGTC 2 cut(s) 46, 160
BmgT120I GGNCC 2 cut(s) 266, 383
BmiI GGNNCC 2 cut(s) 41, 268
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
Bpu1102I GCTNAGC 1 cut(s) 588
BsaHI GRCGYC 3 cut(s) 132, 146, 291
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 7 cut(s) 32, 131, 158, 161, 188, 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 577
Bse1I ACTGG 2 cut(s) 215, 516
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 576, 577
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 215, 516
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 450
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 2 cut(s) 576, 577
BsmAI GTCTC 3 cut(s) 50, 150, 370
BsmBI CGTCTC 2 cut(s) 50, 150
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 76, 112, 301, 395, 457
Bsp1720I GCTNAGC 1 cut(s) 588
BspACI CCGC 5 cut(s) 72, 252, 280, 461, 577
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 41, 268
BspPI GGATC 2 cut(s) 84, 452
BspQI GCTCTTC 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 39
BsrI ACTGG 2 cut(s) 215, 516
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 5 cut(s) 76, 112, 301, 395, 457
BssNI GRCGYC 3 cut(s) 132, 146, 291
BssSI CACGAG 2 cut(s) 534, 551
Bst2BI CACGAG 2 cut(s) 534, 551
Bst4CI ACNGT 3 cut(s) 65, 241, 383
Bst6I CTCTTC 1 cut(s) 577
BstACI GRCGYC 3 cut(s) 132, 146, 291
BstDEI CTNAG 2 cut(s) 83, 588
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 5 cut(s) 79, 115, 304, 398, 460
BstMAI GTCTC 3 cut(s) 50, 150, 370
BstMBI GATC 5 cut(s) 76, 112, 301, 395, 457
BstMCI CGRYCG 1 cut(s) 243
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 1 cut(s) 267
BtrI CACGTC 2 cut(s) 46, 160
BtsCI GGATG 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 266, 383
CseI GACGC 3 cut(s) 41, 140, 299
Csp6I GTAC 3 cut(s) 40, 311, 565
CspCI CAANNNNNGTGG 2 cut(s) 460, 495
CviAII CATG 2 cut(s) 354, 443
CviJI RGCY 7 cut(s) 102, 267, 328, 392, 542, 587, 592
CviKI_1 RGCY 7 cut(s) 102, 267, 328, 392, 542, 587, 592
CviQI GTAC 3 cut(s) 40, 311, 565
DdeI CTNAG 2 cut(s) 83, 588
DpnI GATC 5 cut(s) 78, 114, 303, 397, 459
DpnII GATC 5 cut(s) 76, 112, 301, 395, 457
DriI GACNNNNNGTC 1 cut(s) 86
Eam1104I CTCTTC 1 cut(s) 577
Eam1105I GACNNNNNGTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 383
Esp3I CGTCTC 2 cut(s) 50, 150
FaeI CATG 2 cut(s) 357, 446
FaiI YATR 5 cut(s) 129, 191, 315, 355, 444
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 353, 442
FauI CCCGC 2 cut(s) 65, 570
Fnu4HI GCNGC 3 cut(s) 252, 280, 464
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 3 cut(s) 252, 280, 464
GluI GCNGC 3 cut(s) 252, 280, 464
HaeIII GGCC 1 cut(s) 267
HgaI GACGC 3 cut(s) 41, 140, 299
Hin1I GRCGYC 3 cut(s) 132, 146, 291
Hin1II CATG 2 cut(s) 357, 446
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 2 cut(s) 540, 590
HinfI GANTC 2 cut(s) 87, 196
HphI GGTGA 2 cut(s) 77, 241
Hpy166II GTNNAC 2 cut(s) 144, 448
Hpy188I TCNGA 2 cut(s) 50, 109
Hpy188III TCNNGA 6 cut(s) 116, 206, 416, 479, 536, 551
Hpy8I GTNNAC 2 cut(s) 144, 448
Hpy99I CGWCG 7 cut(s) 35, 101, 113, 122, 151, 275, 293
HpyAV CCTTC 2 cut(s) 157, 226
HpyCH4III ACNGT 3 cut(s) 65, 241, 383
HpyCH4IV ACGT 3 cut(s) 45, 146, 159
HpyCH4V TGCA 4 cut(s) 219, 357, 429, 436
HpyF3I CTNAG 2 cut(s) 83, 588
HpySE526I ACGT 3 cut(s) 45, 146, 159
Hsp92I GRCGYC 3 cut(s) 132, 146, 291
Hsp92II CATG 2 cut(s) 357, 446
KpnI GGTACC 1 cut(s) 43
Kzo9I GATC 5 cut(s) 76, 112, 301, 395, 457
LguI GCTCTTC 1 cut(s) 577
LpnPI CCDG 4 cut(s) 169, 185, 196, 529
Lsp1109I GCAGC 1 cut(s) 450
MaeII ACGT 3 cut(s) 45, 146, 159
MaeIII GTNAC 1 cut(s) 65
MalI GATC 5 cut(s) 78, 114, 303, 397, 459
MboI GATC 5 cut(s) 76, 112, 301, 395, 457
MboII GAAGA 2 cut(s) 356, 594
MfeI CAATTG 2 cut(s) 261, 572
MflI RGATCY 1 cut(s) 457
MluCI AATT 4 cut(s) 261, 411, 452, 572
MluI ACGCGT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 6 cut(s) 19, 115, 130, 171, 450, 543
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 463
MunI CAATTG 2 cut(s) 261, 572
Mva1269I GAATGC 1 cut(s) 353
MvnI CGCG 1 cut(s) 35
NdeII GATC 5 cut(s) 76, 112, 301, 395, 457
NlaIII CATG 2 cut(s) 357, 446
NlaIV GGNNCC 2 cut(s) 41, 268
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 117
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 381
PkrI GCNGC 3 cut(s) 253, 281, 465
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 41, 268
PspPI GGNCC 2 cut(s) 266, 383
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 381
RsaI GTAC 3 cut(s) 41, 312, 566
RsaNI GTAC 3 cut(s) 40, 311, 565
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 3 cut(s) 252, 280, 464
Sau3AI GATC 5 cut(s) 76, 112, 301, 395, 457
Sau96I GGNCC 2 cut(s) 266, 383
SchI GAGTC 1 cut(s) 96
SinI GGWCC 1 cut(s) 383
Sse9I AATT 4 cut(s) 261, 411, 452, 572
SsiI CCGC 5 cut(s) 72, 252, 280, 461, 577
TaaI ACNGT 3 cut(s) 65, 241, 383
TaiI ACGT 3 cut(s) 48, 149, 162
TaqI TCGA 4 cut(s) 79, 176, 194, 394
TasI AATT 4 cut(s) 261, 411, 452, 572
TauI GCSGC 2 cut(s) 254, 282
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 2 cut(s) 74, 506
Tth111I GACNNNGTC 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 507
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.