Rw2G029570

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000405
Physical Location & Seq
Reverse (-)
47950285 .. 47951129
845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029570.1

Sequence Viewer

Length: 639 bp
ATGGAAATGGAGTTCAGGTCTGGAGTGGACGACGCATGGTATGGCGTCAAAATTTTGACGGAAGGCAATAGTGCGGAACGGCTAAGAGTGAAGTTTTGCAACTTTGAAGACGAGTACGACGAGGTGTACGAGGCCAAGGACCTAACGTCAGCTAACCACATGACGAACTTCCTGTCGAGGTTCAGGCCTGTGTCTATTCAGGTGCAGGACTCGGAATGCCCGAACGTGGTGGAGGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGACAATTGCCGCTTCTATGATGCTGTTGTGAAATGTAAGAAGCATCGAAGTGTGGAAGGAGAAGAAGAATGCCTATGCAAGTTCGTTCTATTCTGGAAACATGGGCCAAAGGGTGGAAGCCTTACGACTCAAGCCGTCAGAGATATCTGTAGAGTCCAGCCTCGGAAGGAAGAAGTAGATCCACTTCTTGCCTTGTTTCTACAAACGGCAAGGAGTAGGATCCAAACCAATGAGTCGAGCCTTGTTCTTCTTGCTACCTCTTCTACAGTACCTCATGAGGCCTCTTCGAAAGGAATAAGGGAAACTCCATTTGAAAGAGACCAGGATGTGGAAGAGGTTTCATACAGTGACGGACGCAGAAACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

212

Amino Acids

24.1

Weight (kDa)

5.16

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 140 5.5e-30 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 383, 598
AciI CCGC 3 cut(s) 74, 252, 280
AclWI GGATC 3 cut(s) 443, 484, 497
AcsI RAATTY 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 3 cut(s) 116, 128, 540
AfiI CCNNNNNNNGG 3 cut(s) 226, 383, 598
AgsI TTSAA 2 cut(s) 107, 584
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 591
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 582
AlwI GGATC 3 cut(s) 443, 484, 497
AoxI GGCC 4 cut(s) 132, 185, 374, 549
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 2 cut(s) 139, 374
AsuII TTCGAA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 489
BarI GAAGNNNNNNTAC 2 cut(s) 438, 470
BauI CACGAG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 114
BceAI ACGGC 4 cut(s) 95, 239, 389, 492
BciT130I CCWGG 1 cut(s) 593
BcoDI GTCTC 1 cut(s) 582
BfaI CTAG 1 cut(s) 637
BfmI CTRYAG 2 cut(s) 418, 534
BisI GCNGC 2 cut(s) 252, 280
BlsI GCNGC 2 cut(s) 253, 281
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 139, 374
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 280, 322
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 2 cut(s) 135, 431
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 383, 598
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 135, 431
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 3 cut(s) 226, 383, 598
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 4 cut(s) 134, 187, 376, 551
BslI CCNNNNNNNGG 3 cut(s) 226, 383, 598
BsmAI GTCTC 1 cut(s) 582
BsmI GAATGC 2 cut(s) 221, 344
BsnI GGCC 4 cut(s) 134, 187, 376, 551
Bso31I GGTCTC 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 557
Bsp143I GATC 2 cut(s) 448, 489
BspACI CCGC 3 cut(s) 74, 252, 280
BspANI GGCC 4 cut(s) 134, 187, 376, 551
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 3 cut(s) 443, 484, 497
BspT104I TTCGAA 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 135, 431
BssMI GATC 2 cut(s) 448, 489
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 2 cut(s) 538, 617
Bst6I CTCTTC 3 cut(s) 535, 559, 597
BstACI GRCGYC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 2 cut(s) 451, 492
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 2 cut(s) 448, 489
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 2 cut(s) 418, 534
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 448, 489
BstYI RGATCY 2 cut(s) 448, 489
BsuRI GGCC 4 cut(s) 134, 187, 376, 551
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 139, 374
CseI GACGC 3 cut(s) 34, 41, 633
Csp6I GTAC 3 cut(s) 115, 127, 539
CviAII CATG 5 cut(s) 36, 160, 238, 371, 545
CviQI GTAC 3 cut(s) 115, 127, 539
DdeI CTNAG 1 cut(s) 83
DpnI GATC 2 cut(s) 450, 491
DpnII GATC 2 cut(s) 448, 489
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 3 cut(s) 535, 559, 597
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 3 cut(s) 535, 559, 597
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 2 cut(s) 187, 551
Eco31I GGTCTC 1 cut(s) 582
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 591
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 5 cut(s) 39, 163, 241, 374, 548
FaiI YATR 9 cut(s) 37, 42, 161, 239, 288, 346, 372, 546, 613
FatI CATG 5 cut(s) 35, 159, 237, 370, 544
Fnu4HI GCNGC 2 cut(s) 252, 280
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 2 cut(s) 252, 280
FspBI CTAG 1 cut(s) 637
GluI GCNGC 2 cut(s) 252, 280
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 4 cut(s) 134, 187, 376, 551
HgaI GACGC 3 cut(s) 34, 41, 633
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 5 cut(s) 39, 163, 241, 374, 548
HinfI GANTC 4 cut(s) 209, 397, 423, 503
Hpy166II GTNNAC 2 cut(s) 28, 127
Hpy188I TCNGA 3 cut(s) 214, 410, 435
Hpy188III TCNNGA 3 cut(s) 21, 364, 545
Hpy8I GTNNAC 2 cut(s) 28, 127
Hpy99I CGWCG 2 cut(s) 35, 122
HpyAV CCTTC 3 cut(s) 56, 320, 430
HpyCH4III ACNGT 2 cut(s) 538, 617
HpyCH4IV ACGT 2 cut(s) 146, 225
HpyCH4V TGCA 3 cut(s) 99, 205, 348
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 2 cut(s) 146, 225
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 5 cut(s) 39, 163, 241, 374, 548
Kzo9I GATC 2 cut(s) 448, 489
LweI GCATC 2 cut(s) 280, 322
MaeI CTAG 1 cut(s) 637
MaeII ACGT 2 cut(s) 146, 225
MaeIII GTNAC 2 cut(s) 262, 617
MalI GATC 2 cut(s) 450, 491
MboI GATC 2 cut(s) 448, 489
MboII GAAGA 8 cut(s) 119, 344, 347, 452, 509, 522, 546, 614
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 2 cut(s) 448, 489
MluCI AATT 2 cut(s) 51, 274
MlyI GAGTC 4 cut(s) 203, 391, 432, 512
MslI CAYNNNNRTG 2 cut(s) 242, 318
MspR9I CCNGG 1 cut(s) 593
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 2 cut(s) 221, 344
MvaI CCWGG 1 cut(s) 593
NdeII GATC 2 cut(s) 448, 489
NlaIII CATG 5 cut(s) 39, 163, 241, 374, 548
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 617
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 557
PaeI GCATGC 1 cut(s) 241
PagI TCATGA 1 cut(s) 544
PceI AGGCCT 2 cut(s) 187, 551
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 126, 218
PctI GAATGC 2 cut(s) 221, 344
PflMI CCANNNNNTGG 2 cut(s) 383, 598
PkrI GCNGC 2 cut(s) 253, 281
PleI GAGTC 4 cut(s) 203, 391, 431, 511
PpsI GAGTC 4 cut(s) 203, 391, 431, 511
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 2 cut(s) 139, 374
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 2 cut(s) 448, 489
RsaI GTAC 3 cut(s) 116, 128, 540
RsaNI GTAC 3 cut(s) 115, 127, 539
RseI CAYNNNNRTG 2 cut(s) 242, 318
SatI GCNGC 2 cut(s) 252, 280
Sau3AI GATC 2 cut(s) 448, 489
Sau96I GGNCC 2 cut(s) 139, 374
SchI GAGTC 4 cut(s) 203, 391, 432, 512
ScrFI CCNGG 1 cut(s) 593
SfaNI GCATC 2 cut(s) 280, 322
SfcI CTRYAG 2 cut(s) 418, 534
SfuI TTCGAA 1 cut(s) 557
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 242, 318
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SphI GCATGC 1 cut(s) 241
Sse9I AATT 2 cut(s) 51, 274
SseBI AGGCCT 2 cut(s) 187, 551
SsiI CCGC 3 cut(s) 74, 252, 280
SspMI CTAG 1 cut(s) 637
StuI AGGCCT 2 cut(s) 187, 551
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 538, 617
TaiI ACGT 2 cut(s) 149, 228
TaqI TCGA 4 cut(s) 176, 316, 506, 557
TasI AATT 2 cut(s) 51, 274
TauI GCSGC 2 cut(s) 254, 282
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 1 cut(s) 600
TspGWI ACGGA 2 cut(s) 74, 636
TspRI CASTG 1 cut(s) 622
Van91I CCANNNNNTGG 2 cut(s) 383, 598
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 241
XspI CTAG 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.