RchiOBHm_Chr2g0155781

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000405
Physical Location & Seq
Forward (+)
72639428 .. 72641631
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52465

Sequence Viewer

Length: 738 bp
ATGGCGTTAGAGTTCAGGTCGTACAAGGACGACGCGTGGTACGACGCTCGCGTCGTGACGGAGGGCCGCCGTGGTACTCGCCTGAGAATCAAGTTCTTCAACTTCGGCGACGACCAGGACGAGTTCGTCCACGCCAAGAACTTGAAGAAGCTCCAAGACGTCGACGTTCTGAGGTCTCGGTTCAGGAAAATCTCTGTCCAGTTTCAGGACACGGATTGTTCACGGGTCGAACCGGGCTTGCTCGTCTGCGCCGCCCGACCCGTCGGCGACGGTGACCTGAAGTTCTACGACGCCGTTTTCAGAGGGGTGGTGAAGAAGGAGCATCAGATTGTAAAGGGAGTGGAAGTGTGCAAATGTACCTTCATCCTCGACTGGATTGACAATGGAGAATCTGGTTCATGCACTGTTGAGAATATTTGCAGAGTGCAGGATACTAGTGACGAAGAATTGGATCCGGTTCTGATTTCTTTTCTCAACAAGGCCAGGGAGAGAATCGAAAGTACTTTTTGTACTCGGTTGAGGATTACTAGTGGAGATGTTTATGATCTCAGAGCACCACACAAGGCAAGCTTTTCTCAAATGTTGAGTGATGCAAGCCGTTCCACCGCAGCCATGGCTCTAGGCGGCTCTGTTGAAGGAATGGGTGCAGATTCTGATTCATTAAGGATCTCTTATGAAGCTGCTGATCCCAAAAAGCGCTACAAGGCAAGCTTTTCTCAACCCTTAGTTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

245

Amino Acids

27.67

Weight (kDa)

6.03

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 140 1.7e-29 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 50, 125
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 35, 51
AciI CCGC 4 cut(s) 67, 252, 606, 624
AclWI GGATC 4 cut(s) 446, 459, 674, 680
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 2 cut(s) 159, 291
AfaI GTAC 6 cut(s) 23, 41, 76, 358, 502, 511
AfeI AGCGCT 1 cut(s) 698
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 4 cut(s) 100, 145, 635, 734
AhlI ACTAGT 2 cut(s) 434, 527
AjnI CCWGG 2 cut(s) 114, 482
AluBI AGCT 4 cut(s) 151, 570, 680, 711
AluI AGCT 4 cut(s) 151, 570, 680, 711
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 4 cut(s) 446, 459, 674, 680
AlwNI CAGNNNCTG 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 698
AoxI GGCC 2 cut(s) 64, 480
ApeKI GCWGC 2 cut(s) 608, 680
AspLEI GCGC 2 cut(s) 251, 699
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 284, 322
BamHI GGATCC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 2 cut(s) 620, 667
BceAI ACGGC 3 cut(s) 54, 278, 582
BciT130I CCWGG 2 cut(s) 116, 484
BciVI GTATCC 1 cut(s) 424
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 180
BcuI ACTAGT 2 cut(s) 434, 527
BfaI CTAG 3 cut(s) 435, 528, 620
BfoI RGCGCY 1 cut(s) 700
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 5 cut(s) 67, 252, 609, 625, 681
BlsI GCNGC 5 cut(s) 68, 253, 610, 626, 682
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 3 cut(s) 116, 234, 484
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 3 cut(s) 116, 234, 484
BmsI GCATC 2 cut(s) 331, 580
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 159, 291
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 70, 483, 612
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 199, 377
BseBI CCWGG 2 cut(s) 116, 484
BseDI CCNNGG 3 cut(s) 70, 483, 612
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 74, 161, 562
BseNI ACTGG 2 cut(s) 199, 377
BseXI GCAGC 2 cut(s) 620, 667
BsgI GTGCAG 2 cut(s) 446, 666
Bsh1236I CGCG 2 cut(s) 35, 51
BshFI GGCC 2 cut(s) 66, 482
BsiHKAI GWGCWC 1 cut(s) 556
BsiSI CCGG 2 cut(s) 233, 455
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 2 cut(s) 66, 482
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 4 cut(s) 451, 544, 666, 685
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 4 cut(s) 67, 252, 606, 624
BspANI GGCC 2 cut(s) 66, 482
BspCNI CTCAG 3 cut(s) 75, 162, 561
BspFNI CGCG 2 cut(s) 35, 51
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 4 cut(s) 446, 459, 674, 680
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 199, 377
BssECI CCNNGG 3 cut(s) 70, 483, 612
BssMI GATC 4 cut(s) 451, 544, 666, 685
BssNI GRCGYC 2 cut(s) 159, 291
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 116, 484
Bst4CI ACNGT 2 cut(s) 272, 406
BstACI GRCGYC 2 cut(s) 159, 291
BstC8I GCNNGC 5 cut(s) 49, 239, 568, 595, 709
BstDEI CTNAG 4 cut(s) 83, 170, 548, 724
BstDSI CCRYGG 2 cut(s) 70, 612
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 2 cut(s) 35, 51
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 2 cut(s) 251, 699
BstKTI GATC 4 cut(s) 454, 547, 669, 688
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 4 cut(s) 451, 544, 666, 685
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 2 cut(s) 116, 484
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 114, 232, 482
BstUI CGCG 2 cut(s) 35, 51
BstV1I GCAGC 2 cut(s) 620, 667
BstX2I RGATCY 2 cut(s) 451, 666
BstYI RGATCY 2 cut(s) 451, 666
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 2 cut(s) 66, 482
BtgI CCRYGG 2 cut(s) 70, 612
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 5 cut(s) 49, 239, 568, 595, 709
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 2 cut(s) 251, 699
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 4 cut(s) 40, 41, 53, 299
Csp6I GTAC 6 cut(s) 22, 40, 75, 357, 501, 510
CviAII CATG 2 cut(s) 399, 613
CviQI GTAC 6 cut(s) 22, 40, 75, 357, 501, 510
DdeI CTNAG 4 cut(s) 83, 170, 548, 724
DpnI GATC 4 cut(s) 453, 546, 668, 687
DpnII GATC 4 cut(s) 451, 544, 666, 685
DrdI GACNNNNNNGTC 2 cut(s) 50, 125
DseDI GACNNNNNNGTC 2 cut(s) 50, 125
Eco130I CCWWGG 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 180
Eco47III AGCGCT 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 114, 482
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 2 cut(s) 402, 616
FaiI YATR 4 cut(s) 400, 543, 614, 675
FalI AAGNNNNNCTT 6 cut(s) 554, 586, 655, 687, 695, 727
FatI CATG 2 cut(s) 398, 612
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 67, 252, 609, 625, 681
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 67, 252, 609, 625, 681
FspBI CTAG 3 cut(s) 435, 528, 620
GlaI GCGC 2 cut(s) 250, 698
GluI GCNGC 5 cut(s) 67, 252, 609, 625, 681
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 2 cut(s) 66, 482
HapII CCGG 2 cut(s) 233, 455
HgaI GACGC 4 cut(s) 40, 41, 53, 299
HhaI GCGC 2 cut(s) 251, 699
Hin1I GRCGYC 2 cut(s) 159, 291
Hin1II CATG 2 cut(s) 402, 616
Hin6I GCGC 2 cut(s) 249, 697
HinP1I GCGC 2 cut(s) 249, 697
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 2 cut(s) 568, 709
HinfI GANTC 5 cut(s) 87, 389, 492, 650, 656
HpaII CCGG 2 cut(s) 233, 455
HphI GGTGA 2 cut(s) 284, 322
Hpy166II GTNNAC 3 cut(s) 130, 163, 221
Hpy188I TCNGA 6 cut(s) 171, 302, 327, 462, 551, 655
Hpy188III TCNNGA 3 cut(s) 55, 184, 206
Hpy8I GTNNAC 3 cut(s) 130, 163, 221
Hpy99I CGWCG 9 cut(s) 35, 47, 56, 113, 164, 167, 266, 272, 293
HpyAV CCTTC 3 cut(s) 310, 370, 629
HpyCH4III ACNGT 2 cut(s) 272, 406
HpyCH4IV ACGT 2 cut(s) 159, 165
HpyCH4V TGCA 6 cut(s) 351, 402, 420, 427, 593, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 4 cut(s) 83, 170, 548, 724
HpySE526I ACGT 2 cut(s) 159, 165
Hsp92I GRCGYC 2 cut(s) 159, 291
Hsp92II CATG 2 cut(s) 402, 616
HspAI GCGC 2 cut(s) 249, 697
Kzo9I GATC 4 cut(s) 451, 544, 666, 685
LmnI GCTCC 2 cut(s) 156, 319
Lsp1109I GCAGC 2 cut(s) 620, 667
LweI GCATC 2 cut(s) 331, 580
MaeI CTAG 3 cut(s) 435, 528, 620
MaeII ACGT 2 cut(s) 159, 165
MaeIII GTNAC 3 cut(s) 55, 272, 437
MalI GATC 4 cut(s) 453, 546, 668, 687
MboI GATC 4 cut(s) 451, 544, 666, 685
MboII GAAGA 4 cut(s) 88, 157, 325, 455
MflI RGATCY 2 cut(s) 451, 666
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 1 cut(s) 446
MluI ACGCGT 1 cut(s) 33
MnlI CCTC 5 cut(s) 55, 165, 296, 377, 513
MseI TTAA 1 cut(s) 662
MspI CCGG 2 cut(s) 233, 455
MspR9I CCNGG 3 cut(s) 116, 234, 484
MvaI CCWGG 2 cut(s) 116, 484
MvnI CGCG 2 cut(s) 35, 51
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 612
NdeII GATC 4 cut(s) 451, 544, 666, 685
NlaIII CATG 2 cut(s) 402, 616
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 3 cut(s) 55, 272, 437
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 48, 51, 117
PfeI GAWTC 5 cut(s) 87, 389, 492, 650, 656
PkrI GCNGC 5 cut(s) 68, 253, 610, 626, 682
Psp6I CCWGG 2 cut(s) 114, 482
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 114, 482
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 2 cut(s) 451, 666
RsaI GTAC 6 cut(s) 23, 41, 76, 358, 502, 511
RsaNI GTAC 6 cut(s) 22, 40, 75, 357, 501, 510
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 5 cut(s) 67, 252, 609, 625, 681
Sau3AI GATC 4 cut(s) 451, 544, 666, 685
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 502
ScrFI CCNGG 3 cut(s) 116, 234, 484
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 2 cut(s) 331, 580
SgrDI CGTCGACG 1 cut(s) 161
SpeI ACTAGT 2 cut(s) 434, 527
Sse9I AATT 1 cut(s) 446
SsiI CCGC 4 cut(s) 67, 252, 606, 624
SspI AATATT 1 cut(s) 415
SspMI CTAG 3 cut(s) 435, 528, 620
StyD4I CCNGG 3 cut(s) 114, 232, 482
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 272, 406
TaiI ACGT 2 cut(s) 162, 168
TaqI TCGA 4 cut(s) 162, 228, 369, 495
TasI AATT 1 cut(s) 446
TatI WGTACW 2 cut(s) 500, 509
TauI GCSGC 3 cut(s) 69, 254, 627
TfiI GAWTC 5 cut(s) 87, 389, 492, 650, 656
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 3 cut(s) 55, 272, 437
TseI GCWGC 2 cut(s) 608, 680
Tsp45I GTSAC 3 cut(s) 55, 272, 437
TspDTI ATGAA 4 cut(s) 352, 387, 648, 690
TspGWI ACGGA 2 cut(s) 74, 227
TspRI CASTG 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 3 cut(s) 435, 528, 620
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.