MD09G1129100.v1.1

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000405
Physical Location & Seq
Reverse (-)
9957618 .. 9958515
898 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1129100.v1.1.491

Sequence Viewer

Length: 315 bp
ATGGCGGTGGAGTTCAGGTCTGGCTTAGACGACGCCTGGTACGACGTCCTGATAACGAACGACGGCTGTGATCGACTGAGAGTGAAGTTCGTCGGCTTCGCCGACGACCATGACGAGGTTTATGAAGTGAACGAGTTGAGTTCGTTCAACGACATCGACGAGTTCAGCCGGAGGTTCAGGCCGTTGTCCGTACAAGTTCAGGACACGGAGTGCTCTCAGGTGGTGAAGGGCATGCTCGTCTGTGCCTCTCACTCCATTCGCCACGGTGATCGCCGCTTCTACGACGCCGTTGTCAAAAAGGTAGTTGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

105

Amino Acids

11.99

Weight (kDa)

4.78

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 102 2.1e-22 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AatII GACGTC 1 cut(s) 48
AciI CCGC 2 cut(s) 5, 274
AcyI GRCGYC 3 cut(s) 33, 45, 285
AdeI CACNNNGTG 1 cut(s) 210
AfaI GTAC 2 cut(s) 41, 192
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 215
AoxI GGCC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 235, 278
Bbv12I GWGCWC 1 cut(s) 215
BceAI ACGGC 3 cut(s) 79, 166, 272
BciT130I CCWGG 1 cut(s) 37
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 37
BsaHI GRCGYC 3 cut(s) 33, 45, 285
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 68, 230
BshFI GGCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 70, 268
BspACI CCGC 2 cut(s) 5, 274
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 69, 229
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 70, 268
BssNI GRCGYC 3 cut(s) 33, 45, 285
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 266
BstACI GRCGYC 3 cut(s) 33, 45, 285
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 25, 77, 216
BstDSI CCRYGG 1 cut(s) 262
BstKTI GATC 2 cut(s) 73, 271
BstMBI GATC 2 cut(s) 70, 268
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 35
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 233
CseI GACGC 2 cut(s) 41, 293
Csp6I GTAC 2 cut(s) 40, 191
CviAII CATG 2 cut(s) 110, 232
CviJI RGCY 5 cut(s) 24, 66, 96, 168, 181
CviKI_1 RGCY 5 cut(s) 24, 66, 96, 168, 181
CviQI GTAC 2 cut(s) 40, 191
DdeI CTNAG 3 cut(s) 25, 77, 216
DpnI GATC 2 cut(s) 72, 270
DpnII GATC 2 cut(s) 70, 268
DraIII CACNNNGTG 1 cut(s) 210
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 35
FaeI CATG 2 cut(s) 113, 235
FaiI YATR 3 cut(s) 111, 123, 233
FatI CATG 2 cut(s) 109, 231
Fnu4HI GCNGC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 274
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 169
HgaI GACGC 2 cut(s) 41, 293
Hin1I GRCGYC 3 cut(s) 33, 45, 285
Hin1II CATG 2 cut(s) 113, 235
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 169
HphI GGTGA 2 cut(s) 235, 278
Hpy166II GTNNAC 2 cut(s) 130, 307
Hpy188III TCNNGA 2 cut(s) 49, 200
Hpy8I GTNNAC 2 cut(s) 130, 307
Hpy99I CGWCG 7 cut(s) 35, 47, 65, 95, 107, 161, 287
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 45
HpyF3I CTNAG 3 cut(s) 25, 77, 216
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 3 cut(s) 33, 45, 285
Hsp92II CATG 2 cut(s) 113, 235
Kzo9I GATC 2 cut(s) 70, 268
LpnPI CCDG 8 cut(s) 6, 22, 49, 62, 163, 182, 185, 203
MaeII ACGT 1 cut(s) 45
MalI GATC 2 cut(s) 72, 270
MboI GATC 2 cut(s) 70, 268
MhlI GDGCHC 1 cut(s) 215
MnlI CCTC 3 cut(s) 109, 165, 256
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
NdeII GATC 2 cut(s) 70, 268
NlaIII CATG 2 cut(s) 113, 235
NspI RCATGY 1 cut(s) 235
PaeI GCATGC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 99, 111, 156
PkrI GCNGC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
RsaI GTAC 2 cut(s) 41, 192
RsaNI GTAC 2 cut(s) 40, 191
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 2 cut(s) 70, 268
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 215
SetI ASST 6 cut(s) 20, 48, 120, 176, 222, 303
SphI GCATGC 1 cut(s) 235
SsiI CCGC 2 cut(s) 5, 274
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 73, 156
TauI GCSGC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 178, 221
XceI RCATGY 1 cut(s) 235
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.