Rmu_sc0003417.1_g000005

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003417.1
OG0000405
Physical Location & Seq
Forward (+)
30232 .. 30940
709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003417.1_g000005.1.cds

Sequence Viewer

Length: 603 bp
atggcgttagagttcaggtcgtacagggacgacgcgtggtacgacgcgagcgtcgtgacggagggccgccgtggtactcgcctgagaatcaagttcttcaacttcggcgacgaccaggacgagttcgtccacgccaagaacttgaagaagctccaagacgtcgacgctctgaggtctcggttcaggaaaatctctgtccagtttcaggacacggattgttcgcgggtcgaaccgggcttgctcgtctgcgccgcccgacccgtcggcgacggtgacctgaagttctacgacgccgttttcagaggggtggtgaagaaggagcatcagattgtaaaaggagtggaagtgtgcaaatgtaccttcatcctcgactggattgacaatggagaatctggttcatgcactgttgagaatatttgcagagtgcaggatactagtgacgaagaattggatccggttctgatttcttttctcaacaaggccagggagagaatcgaaagtactttttgtactcggttgaggattactagcggagatgtttatgatctcagagcaccacacaaggcaagcttttctcaaatgttgagtgttttgaatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

200

Amino Acids

22.89

Weight (kDa)

5.98

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 50, 125
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 35, 47, 223
AciI CCGC 4 cut(s) 67, 223, 252, 531
AclWI GGATC 2 cut(s) 446, 459
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 2 cut(s) 159, 291
AfaI GTAC 6 cut(s) 23, 41, 76, 358, 502, 511
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 3 cut(s) 100, 145, 595
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 2 cut(s) 114, 482
AluBI AGCT 2 cut(s) 151, 570
AluI AGCT 2 cut(s) 151, 570
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 2 cut(s) 446, 459
AoxI GGCC 2 cut(s) 64, 480
ApoI RAATTY 1 cut(s) 595
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 284, 322
BamHI GGATCC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 556
BceAI ACGGC 2 cut(s) 54, 278
BciT130I CCWGG 2 cut(s) 116, 484
BciVI GTATCC 1 cut(s) 424
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 180
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 2 cut(s) 435, 528
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 2 cut(s) 67, 252
BlsI GCNGC 2 cut(s) 68, 253
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 3 cut(s) 116, 234, 484
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 3 cut(s) 116, 234, 484
BmsI GCATC 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 159, 291
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 70, 483
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 199, 377
BseBI CCWGG 2 cut(s) 116, 484
BseDI CCNNGG 2 cut(s) 70, 483
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 74, 161, 562
BseNI ACTGG 2 cut(s) 199, 377
BsgI GTGCAG 1 cut(s) 446
Bsh1236I CGCG 3 cut(s) 35, 47, 223
BshFI GGCC 2 cut(s) 66, 482
BsiHKAI GWGCWC 1 cut(s) 556
BsiSI CCGG 2 cut(s) 233, 455
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 66, 482
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 2 cut(s) 451, 544
BspACI CCGC 4 cut(s) 67, 223, 252, 531
BspANI GGCC 2 cut(s) 66, 482
BspCNI CTCAG 3 cut(s) 75, 162, 561
BspFNI CGCG 3 cut(s) 35, 47, 223
BspLI GGNNCC 1 cut(s) 453
BspPI GGATC 2 cut(s) 446, 459
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 199, 377
BssECI CCNNGG 2 cut(s) 70, 483
BssMI GATC 2 cut(s) 451, 544
BssNI GRCGYC 2 cut(s) 159, 291
Bst2UI CCWGG 2 cut(s) 116, 484
Bst4CI ACNGT 2 cut(s) 272, 406
BstACI GRCGYC 2 cut(s) 159, 291
BstC8I GCNNGC 3 cut(s) 49, 239, 568
BstDEI CTNAG 3 cut(s) 83, 170, 548
BstDSI CCRYGG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 3 cut(s) 35, 47, 223
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 2 cut(s) 454, 547
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 451, 544
BstNI CCWGG 2 cut(s) 116, 484
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 3 cut(s) 114, 232, 482
BstUI CGCG 3 cut(s) 35, 47, 223
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 2 cut(s) 66, 482
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 3 cut(s) 49, 239, 568
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 5 cut(s) 40, 41, 53, 173, 299
Csp6I GTAC 6 cut(s) 22, 40, 75, 357, 501, 510
CviAII CATG 1 cut(s) 399
CviJI RGCY 5 cut(s) 66, 151, 237, 482, 570
CviKI_1 RGCY 5 cut(s) 66, 151, 237, 482, 570
CviQI GTAC 6 cut(s) 22, 40, 75, 357, 501, 510
DdeI CTNAG 3 cut(s) 83, 170, 548
DpnI GATC 2 cut(s) 453, 546
DpnII GATC 2 cut(s) 451, 544
DrdI GACNNNNNNGTC 2 cut(s) 50, 125
DseDI GACNNNNNNGTC 2 cut(s) 50, 125
Eco31I GGTCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 114, 482
FaeI CATG 1 cut(s) 402
FaiI YATR 2 cut(s) 400, 543
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 398
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 67, 252
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 67, 252
FspBI CTAG 2 cut(s) 435, 528
GlaI GCGC 1 cut(s) 250
GluI GCNGC 2 cut(s) 67, 252
HaeIII GGCC 2 cut(s) 66, 482
HapII CCGG 2 cut(s) 233, 455
HgaI GACGC 5 cut(s) 40, 41, 53, 173, 299
HhaI GCGC 1 cut(s) 251
Hin1I GRCGYC 2 cut(s) 159, 291
Hin1II CATG 1 cut(s) 402
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 3 cut(s) 87, 389, 492
HpaII CCGG 2 cut(s) 233, 455
HphI GGTGA 2 cut(s) 284, 322
Hpy166II GTNNAC 2 cut(s) 130, 163
Hpy188I TCNGA 5 cut(s) 171, 302, 327, 462, 551
Hpy188III TCNNGA 3 cut(s) 55, 184, 206
Hpy8I GTNNAC 2 cut(s) 130, 163
Hpy99I CGWCG 9 cut(s) 35, 47, 56, 113, 164, 167, 266, 272, 293
HpyAV CCTTC 2 cut(s) 310, 370
HpyCH4III ACNGT 2 cut(s) 272, 406
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 4 cut(s) 351, 402, 420, 427
HpyF3I CTNAG 3 cut(s) 83, 170, 548
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 2 cut(s) 159, 291
Hsp92II CATG 1 cut(s) 402
HspAI GCGC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 451, 544
LmnI GCTCC 2 cut(s) 156, 319
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 435, 528
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 55, 272, 437
MalI GATC 2 cut(s) 453, 546
MboI GATC 2 cut(s) 451, 544
MboII GAAGA 4 cut(s) 88, 157, 325, 455
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 2 cut(s) 446, 595
MluI ACGCGT 1 cut(s) 33
MnlI CCTC 5 cut(s) 55, 165, 296, 377, 513
MspI CCGG 2 cut(s) 233, 455
MspR9I CCNGG 3 cut(s) 116, 234, 484
MvaI CCWGG 2 cut(s) 116, 484
MvnI CGCG 3 cut(s) 35, 47, 223
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 451, 544
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 3 cut(s) 55, 272, 437
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 48, 51, 117
PfeI GAWTC 3 cut(s) 87, 389, 492
PkrI GCNGC 2 cut(s) 68, 253
Psp6I CCWGG 2 cut(s) 114, 482
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 114, 482
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 6 cut(s) 23, 41, 76, 358, 502, 511
RsaNI GTAC 6 cut(s) 22, 40, 75, 357, 501, 510
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 2 cut(s) 67, 252
Sau3AI GATC 2 cut(s) 451, 544
Sau96I GGNCC 1 cut(s) 64
ScaI AGTACT 1 cut(s) 502
ScrFI CCNGG 3 cut(s) 116, 234, 484
SduI GDGCHC 1 cut(s) 556
SetI ASST 7 cut(s) 20, 153, 162, 176, 279, 362, 572
SfaNI GCATC 1 cut(s) 331
SgrDI CGTCGACG 1 cut(s) 161
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 2 cut(s) 446, 595
SsiI CCGC 4 cut(s) 67, 223, 252, 531
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 435, 528
StyD4I CCNGG 3 cut(s) 114, 232, 482
TaaI ACNGT 2 cut(s) 272, 406
TaiI ACGT 1 cut(s) 162
TaqI TCGA 4 cut(s) 162, 228, 369, 495
TasI AATT 2 cut(s) 446, 595
TatI WGTACW 2 cut(s) 500, 509
TauI GCSGC 2 cut(s) 69, 254
TfiI GAWTC 3 cut(s) 87, 389, 492
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 3 cut(s) 55, 272, 437
Tsp45I GTSAC 3 cut(s) 55, 272, 437
TspDTI ATGAA 2 cut(s) 352, 387
TspGWI ACGGA 2 cut(s) 74, 227
TspRI CASTG 1 cut(s) 409
XapI RAATTY 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 2 cut(s) 435, 528
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.