Rmu_sc0024719.1_g000001

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024719.1
OG0000405
Physical Location & Seq
Forward (+)
1 .. 2498
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024719.1_g000001.1.cds

Sequence Viewer

Length: 585 bp
gttacaagtccgcccaaggaatctttgcctttgagctgctacgttgaaggaataagtgataatgcttctgatatggatggacgagatgacatggatgtaggaggggctccctatatggtaatagttgagaacctggagaaggaaatatcaccggttacaattatggaatttatacaccagcaagtttcaatcacatgtcaagtctttgtttcgccaagtaagtcatcggagttgtatacacgtgcaattatcctattagacaacaaaaagaatcttgagaagttatccgactttttggagagtccagatcacatcatcatttcctccataggaaggccttggctcatgacagagaaaagatcattacctgagacactaagggcatcaatccaaaccttatctcagatggaattgaagacaagaactctaagtaacaatgagttgaatgttgtcttttctggaagtcacgaatacatggaagctaaagagcaacaaaaattgtttaaagagttcactgaacaccagtgtggacttcagcggaggttacaacttgaagaggaaaagatctcaaagaagtacaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

194

Amino Acids

22.2

Weight (kDa)

5.22

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 236
AciI CCGC 2 cut(s) 11, 538
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 518
AcvI CACGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 139, 333
AflIII ACRYGT 2 cut(s) 194, 239
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 5 cut(s) 47, 189, 415, 445, 554
AjnI CCWGG 1 cut(s) 132
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 2 cut(s) 36, 482
AluI AGCT 2 cut(s) 36, 482
Alw26I GTCTC 1 cut(s) 365
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 167
AsiGI ACCGGT 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 109
BbrPI CACGTG 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 71, 400
BciT130I CCWGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 365
BglII AGATCT 1 cut(s) 564
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 422
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 296
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 15, 338
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 333
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 523
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 15, 338
BseGI GGATG 2 cut(s) 82, 100
BseLI CCNNNNNNNGG 2 cut(s) 139, 333
BseMII CTCAG 2 cut(s) 360, 416
BseNI ACTGG 1 cut(s) 523
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 151
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 139, 333
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 3 cut(s) 307, 359, 564
BspACI CCGC 2 cut(s) 11, 538
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 2 cut(s) 361, 415
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 15, 338
BssMI GATC 3 cut(s) 307, 359, 564
BssNAI GTATAC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 15, 338
Bst1107I GTATAC 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 242
BstDEI CTNAG 4 cut(s) 369, 377, 402, 428
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 2 cut(s) 82, 100
BstKTI GATC 3 cut(s) 310, 362, 567
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 3 cut(s) 307, 359, 564
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BstZ17I GTATAC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 82, 100
BtsIMutI CAGTG 2 cut(s) 513, 530
CciI TCATGA 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 151
Csp6I GTAC 1 cut(s) 577
CspAI ACCGGT 1 cut(s) 151
CviAII CATG 4 cut(s) 91, 195, 346, 475
CviJI RGCY 5 cut(s) 36, 107, 337, 343, 482
CviKI_1 RGCY 5 cut(s) 36, 107, 337, 343, 482
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 4 cut(s) 369, 377, 402, 428
DpnI GATC 3 cut(s) 309, 361, 566
DpnII GATC 3 cut(s) 307, 359, 564
DraI TTTAAA 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 15, 338
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 518
Eco72I CACGTG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 15, 338
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 15, 338
FaeI CATG 4 cut(s) 94, 198, 349, 478
FatI CATG 4 cut(s) 90, 194, 345, 474
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 2 cut(s) 89, 107
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 337
HapII CCGG 1 cut(s) 152
Hin1II CATG 4 cut(s) 94, 198, 349, 478
HinfI GANTC 3 cut(s) 20, 271, 301
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 3 cut(s) 237, 513, 530
Hpy188I TCNGA 4 cut(s) 70, 229, 289, 405
Hpy188III TCNNGA 5 cut(s) 275, 305, 346, 459, 467
Hpy8I GTNNAC 3 cut(s) 237, 513, 530
HpyAV CCTTC 3 cut(s) 41, 133, 327
HpyCH4IV ACGT 2 cut(s) 42, 241
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 4 cut(s) 369, 377, 402, 428
HpySE526I ACGT 2 cut(s) 42, 241
Hsp92II CATG 4 cut(s) 94, 198, 349, 478
Kzo9I GATC 3 cut(s) 307, 359, 564
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 9 cut(s) 119, 146, 165, 191, 318, 381, 444, 536, 565
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 392
MaeII ACGT 2 cut(s) 42, 241
MaeIII GTNAC 4 cut(s) 154, 431, 464, 543
MalI GATC 3 cut(s) 309, 361, 566
MboI GATC 3 cut(s) 307, 359, 564
MboII GAAGA 2 cut(s) 427, 566
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 5 cut(s) 159, 167, 246, 410, 497
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 4 cut(s) 95, 334, 534, 550
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
NdeII GATC 3 cut(s) 307, 359, 564
NlaIII CATG 4 cut(s) 94, 198, 349, 478
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 525
PagI TCATGA 1 cut(s) 345
PceI AGGCCT 1 cut(s) 337
PciI ACATGT 1 cut(s) 194
PfeI GAWTC 2 cut(s) 20, 271
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 309
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
PpsI GAGTC 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 242
PscI ACATGT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 132
PspCI CACGTG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 564
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 3 cut(s) 307, 359, 564
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 109
SetI ASST 9 cut(s) 38, 45, 135, 244, 370, 398, 484, 545, 584
SfaNI GCATC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 5 cut(s) 159, 167, 246, 410, 497
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 11, 538
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 15, 338
TaiI ACGT 2 cut(s) 45, 244
TasI AATT 5 cut(s) 159, 167, 246, 410, 497
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 2 cut(s) 20, 271
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 520, 530
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 464
TspRI CASTG 2 cut(s) 520, 530
XagI CCTNNNNNAGG 1 cut(s) 137
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.