Rmu_sc0001446.1_g000013

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001446.1
OG0000405
Physical Location & Seq
Forward (+)
41386 .. 41718
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001446.1_g000013.1.cds

Sequence Viewer

Length: 333 bp
atggatttggagttcaggtcgtgcgtggacgacgcgtggtaccacgtccgaatagagacgaacggtgacggcggggatcgactgagagtcaagttcgtcggcttctccgacgatcacgacgaggtttatgacaccgaggagttgacgtcgtttagagacgtggaggagtttaggtcgaggttcaggcgtatgtcgattcaggttcaagactgggagtgcagaaaggtggtgaaggggacggtcgtgtgtgccgccatttcaattggccccgacgactgccgcttctacgacgccgttgttgatcgggtaggttctccttcattctttttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

110

Amino Acids

12.85

Weight (kDa)

4.66

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 39
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 72, 252, 280
AclWI GGATC 1 cut(s) 84
AcyI GRCGYC 2 cut(s) 146, 291
AfaI GTAC 1 cut(s) 41
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 206, 261
AhdI GACNNNNNGTC 1 cut(s) 86
AjiI CACGTC 2 cut(s) 46, 160
AloI GAACNNNNNNTCC 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 50, 150
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 265
Asp718I GGTACC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 77, 241
BanI GGYRCC 1 cut(s) 39
BceAI ACGGC 2 cut(s) 85, 278
BcoDI GTCTC 2 cut(s) 50, 150
BisI GCNGC 2 cut(s) 252, 280
BlsI GCNGC 2 cut(s) 253, 281
BmeRI GACNNNNNGTC 1 cut(s) 86
BmgBI CACGTC 2 cut(s) 46, 160
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 2 cut(s) 41, 268
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BsaHI GRCGYC 2 cut(s) 146, 291
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 5 cut(s) 32, 131, 158, 161, 188
Bse1I ACTGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 2 cut(s) 152, 179
BsgI GTGCAG 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 2 cut(s) 50, 150
BsmBI CGTCTC 2 cut(s) 50, 150
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 76, 112, 301
BspACI CCGC 3 cut(s) 72, 252, 280
BspANI GGCC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 41, 268
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 3 cut(s) 76, 112, 301
BssNI GRCGYC 2 cut(s) 146, 291
Bst4CI ACNGT 2 cut(s) 65, 241
BstACI GRCGYC 2 cut(s) 146, 291
BstDEI CTNAG 1 cut(s) 83
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 3 cut(s) 79, 115, 304
BstMAI GTCTC 2 cut(s) 50, 150
BstMBI GATC 3 cut(s) 76, 112, 301
BstMCI CGRYCG 1 cut(s) 243
BstUI CGCG 1 cut(s) 35
BsuRI GGCC 1 cut(s) 267
BtrI CACGTC 2 cut(s) 46, 160
Cfr13I GGNCC 1 cut(s) 266
CseI GACGC 2 cut(s) 41, 299
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 2 cut(s) 102, 267
CviKI_1 RGCY 2 cut(s) 102, 267
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 83
DpnI GATC 3 cut(s) 78, 114, 303
DpnII GATC 3 cut(s) 76, 112, 301
DriI GACNNNNNGTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 86
Esp3I CGTCTC 2 cut(s) 50, 150
FaiI YATR 2 cut(s) 129, 191
FaqI GGGAC 1 cut(s) 250
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 252, 280
Fsp4HI GCNGC 2 cut(s) 252, 280
GluI GCNGC 2 cut(s) 252, 280
HaeIII GGCC 1 cut(s) 267
HgaI GACGC 2 cut(s) 41, 299
Hin1I GRCGYC 2 cut(s) 146, 291
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 2 cut(s) 87, 196
HphI GGTGA 2 cut(s) 77, 241
Hpy166II GTNNAC 2 cut(s) 28, 144
Hpy188I TCNGA 2 cut(s) 50, 109
Hpy188III TCNNGA 2 cut(s) 116, 206
Hpy8I GTNNAC 2 cut(s) 28, 144
Hpy99I CGWCG 7 cut(s) 35, 101, 113, 122, 151, 275, 293
HpyAV CCTTC 2 cut(s) 226, 327
HpyCH4III ACNGT 2 cut(s) 65, 241
HpyCH4IV ACGT 3 cut(s) 45, 146, 159
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 83
HpySE526I ACGT 3 cut(s) 45, 146, 159
Hsp92I GRCGYC 2 cut(s) 146, 291
KpnI GGTACC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 76, 112, 301
LpnPI CCDG 3 cut(s) 169, 185, 196
MaeII ACGT 3 cut(s) 45, 146, 159
MaeIII GTNAC 1 cut(s) 65
MalI GATC 3 cut(s) 78, 114, 303
MboI GATC 3 cut(s) 76, 112, 301
MfeI CAATTG 1 cut(s) 261
MluCI AATT 1 cut(s) 261
MluI ACGCGT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 115, 130, 157, 171
MunI CAATTG 1 cut(s) 261
MvnI CGCG 1 cut(s) 35
NdeII GATC 3 cut(s) 76, 112, 301
NlaIV GGNNCC 2 cut(s) 41, 268
NmuCI GTSAC 1 cut(s) 65
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 117
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 253, 281
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 41, 268
PspPI GGNCC 1 cut(s) 266
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 2 cut(s) 252, 280
Sau3AI GATC 3 cut(s) 76, 112, 301
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 96
Sse9I AATT 1 cut(s) 261
SsiI CCGC 3 cut(s) 72, 252, 280
TaaI ACNGT 2 cut(s) 65, 241
TaiI ACGT 3 cut(s) 48, 149, 162
TaqI TCGA 3 cut(s) 79, 176, 194
TasI AATT 1 cut(s) 261
TauI GCSGC 2 cut(s) 254, 282
TfiI GAWTC 1 cut(s) 196
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 309
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.