Rh5DG208400

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000405
Physical Location & Seq
Forward (+)
23114000 .. 23114182
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG208400.1

Sequence Viewer

Length: 183 bp
ATGGCGTTAGAGTTCCAGTCACACAAGGACGGCGCTTGGTACGAAGCCCGTCTACTAACGGAGTACGCCGGCGGTGACCGCCGTCTCAGAATCATGTTCGCCACCTTCTCCGACGAAGAGGACGTACGAGTTGGTCAATGCCAAGGACCTGAAGTCGCTCCAAGACGTACGTCGACGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

60

Amino Acids

6.89

Weight (kDa)

5.55

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 44 4.7e-06 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 52, 173
AciI CCGC 2 cut(s) 72, 79
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 4 cut(s) 41, 65, 126, 169
AhdI GACNNNNNGTC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 146
BarI GAAGNNNNNNTAC 4 cut(s) 36, 68, 108, 140
BceAI ACGGC 2 cut(s) 46, 66
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 146
BmeRI GACNNNNNGTC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 146
BoxI GACNNNNGTC 2 cut(s) 81, 169
BsaJI CCNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 69
BsiWI CGTACG 2 cut(s) 124, 167
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BspACI CCGC 2 cut(s) 72, 79
BspCNI CTCAG 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstPAI GACNNNNGTC 2 cut(s) 81, 169
BstPI GGTNACC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 4 cut(s) 40, 64, 125, 168
CviAII CATG 1 cut(s) 94
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
CviQI GTAC 4 cut(s) 40, 64, 125, 168
DdeI CTNAG 1 cut(s) 86
DriI GACNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 111
Eam1105I GACNNNNNGTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FatI CATG 1 cut(s) 93
FblI GTMKAC 2 cut(s) 52, 173
GlaI GCGC 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 36
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 53, 174
Hpy188I TCNGA 2 cut(s) 89, 112
Hpy8I GTNNAC 2 cut(s) 53, 174
Hpy99I CGWCG 3 cut(s) 116, 175, 178
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 3 cut(s) 123, 166, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 3 cut(s) 123, 166, 170
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 33
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 29, 82, 162
MaeII ACGT 3 cut(s) 123, 166, 170
MaeIII GTNAC 2 cut(s) 18, 74
MboII GAAGA 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 1 cut(s) 112
MreI CGCCGGCG 1 cut(s) 68
MroNI GCCGGC 1 cut(s) 68
MspI CCGG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 78
NaeI GCCGGC 1 cut(s) 70
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 18, 74
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 90
Pfl23II CGTACG 2 cut(s) 124, 167
PpuMI RGGWCCY 1 cut(s) 146
PshAI GACNNNNGTC 2 cut(s) 81, 169
Psp5II RGGWCCY 1 cut(s) 146
PspEI GGTNACC 1 cut(s) 74
PspLI CGTACG 2 cut(s) 124, 167
PspPI GGNCC 1 cut(s) 146
PspPPI RGGWCCY 1 cut(s) 146
RsaI GTAC 4 cut(s) 41, 65, 126, 169
RsaNI GTAC 4 cut(s) 40, 64, 125, 168
SalI GTCGAC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 146
SetI ASST 5 cut(s) 107, 126, 151, 169, 173
SgrAI CRCCGGYG 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 172
SinI GGWCC 1 cut(s) 146
SsiI CCGC 2 cut(s) 72, 79
StyI CCWWGG 1 cut(s) 142
TaiI ACGT 3 cut(s) 126, 169, 173
TaqI TCGA 1 cut(s) 173
TfiI GAWTC 1 cut(s) 90
TseFI GTSAC 2 cut(s) 18, 74
Tsp45I GTSAC 2 cut(s) 18, 74
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 146
XmiI GTMKAC 2 cut(s) 52, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.