Rroxscaffold_7G00195910

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000405
Physical Location & Seq
Reverse (-)
38501902 .. 38502442
541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195910.1

Sequence Viewer

Length: 330 bp
ATGGCCATAGAAATGGAGTTCAGGTCTAGGGTAGACGACCGGTTGAGAGTGAAGTTCTATGACTTCAGAGACGAGGACAGTGAGCTGTACGAGGTGAAGGACCTAACCATCATGGTGGAGGGCACGCTCGTGTGTGCCACCGTTTCAATTTCACCAAACAACTATCGCTTCTATGGCGCCATTGTGAAACGTAAGAAGCATCAGATTGTGGATGGAAAAGAAGAATGCCTACGCAACTTTGCTCTCACTTGGAAACATGGGACAGAGGGTGGAAGTCTTGCGACTCAACCATCGAAGATATCTATAGAGTCCAACCTCAGACAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

109

Amino Acids

12.65

Weight (kDa)

7.76

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccI GTMKAC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 39
AgsI TTSAA 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 1 cut(s) 3
AsiGI ACCGGT 1 cut(s) 39
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 106, 144
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BauI CACGAG 1 cut(s) 128
BccI CCATC 3 cut(s) 116, 206, 298
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse118I RCCGGY 1 cut(s) 39
BseGI GGATG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 63
BsmBI CGTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 125
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 80, 142
BstACI GRCGYC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 63
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 125
BstXI CCANNNNNNTGG 2 cut(s) 13, 115
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 88
CspAI ACCGGT 1 cut(s) 39
CviAII CATG 2 cut(s) 112, 257
CviJI RGCY 2 cut(s) 5, 85
CviKI_1 RGCY 2 cut(s) 5, 85
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 317
DinI GGCGCC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 100
EcoRV GATATC 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 2 cut(s) 115, 260
FaiI YATR 6 cut(s) 8, 60, 113, 174, 258, 305
FaqI GGGAC 1 cut(s) 274
FatI CATG 2 cut(s) 111, 256
FblI GTMKAC 1 cut(s) 33
FokI GGATG 1 cut(s) 224
FspBI CTAG 1 cut(s) 27
GlaI GCGC 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 2 cut(s) 115, 260
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 2 cut(s) 283, 308
HpaII CCGG 1 cut(s) 40
HphI GGTGA 2 cut(s) 106, 144
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 68, 204, 320
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 80, 142
HpyCH4IV ACGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 2 cut(s) 115, 260
HspAI GCGC 1 cut(s) 177
KasI GGCGCC 1 cut(s) 176
LpnPI CCDG 2 cut(s) 7, 53
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 190
MboII GAAGA 2 cut(s) 233, 307
MhlI GDGCHC 1 cut(s) 125
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 2 cut(s) 277, 317
MnlI CCTC 5 cut(s) 67, 85, 112, 259, 326
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 11, 113, 128
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 174
NarI GGCGCC 1 cut(s) 177
NlaIII CATG 2 cut(s) 115, 260
NlaIV GGNNCC 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 128
PctI GAATGC 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 39
PleI GAGTC 2 cut(s) 277, 316
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 2 cut(s) 277, 316
PpuMI RGGWCCY 1 cut(s) 100
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 100
PspPPI RGGWCCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 3 cut(s) 11, 113, 128
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 2 cut(s) 277, 317
SduI GDGCHC 1 cut(s) 125
SetI ASST 6 cut(s) 26, 87, 96, 105, 193, 318
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 303
SfoI GGCGCC 1 cut(s) 178
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 11, 113, 128
Sse9I AATT 1 cut(s) 147
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 80, 142
TaiI ACGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 147
TscAI CASTG 1 cut(s) 85
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.