Rroxscaffold_2G00093490

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000405
Physical Location & Seq
Reverse (-)
14832408 .. 14833115
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093490.1

Sequence Viewer

Length: 570 bp
ATGGCGTTAGAGTTCCGGTCGTACAAGGACGACGCGTGGTACGACGCTCGCGTCGTGACTGAGGGCCGCCGTGGTACTCGCCTGAGAATCAAGTTCCTCGACTTCGGCGACGACCAGGACGAGTTCGTCCACGCCAAGAACTTGAAGAAGCTCCCAGACGTCGACGCTCTGAGGACACGGATTGTTCCCGGGGTCGAACCGGGCCTGCTCGTCTGCGCCGCCCGACCCGTCGGCGACGGTGACCTGAAGTTCTACGACGCCGTTTTCAGAGGGGTGGTGAAGAAGGAGCATCAGATTGTGAAGGGAGTGGAAGTGTGCAAATGTACCTTCATCCTCGACTGGATTGACAGTGGAGAAACTGGTTCATGCACTGTTGAGAACATTTGCAGAGTGCAGGATACCAGTGACGAAGAATTGGATCCGGCTCTGATTTCTTTTCTCAACAAGGCCAGGGAGAGAATCGAAAGTACTTTTTGTACTCGGTTGAGGATTACTAGTGGAGATGTTTATGATCTCAGAGCACCACACAAGGCAAGCTTTTCTCAAATGATGAGTGTTTTGAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

5.69

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 129 7e-21 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 50, 125
AatII GACGTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 35, 51
AciI CCGC 2 cut(s) 67, 219
AclWI GGATC 2 cut(s) 413, 426
AcsI RAATTY 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 2 cut(s) 159, 258
AfaI GTAC 6 cut(s) 23, 41, 76, 325, 469, 478
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 145, 562
AhlI ACTAGT 1 cut(s) 494
AjnI CCWGG 2 cut(s) 114, 449
AluBI AGCT 2 cut(s) 151, 537
AluI AGCT 2 cut(s) 151, 537
Alw21I GWGCWC 1 cut(s) 523
AlwI GGATC 2 cut(s) 413, 426
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 64, 202, 447
ApoI RAATTY 1 cut(s) 562
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 64, 202
AsuC2I CCSGG 3 cut(s) 189, 190, 201
AsuHPI GGTGA 2 cut(s) 251, 289
AvaI CYCGRG 1 cut(s) 188
BamHI GGATCC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 523
BceAI ACGGC 2 cut(s) 54, 245
BciT130I CCWGG 2 cut(s) 116, 451
BciVI GTATCC 1 cut(s) 391
BcnI CCSGG 3 cut(s) 189, 190, 201
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 2 cut(s) 67, 219
BlsI GCNGC 2 cut(s) 68, 220
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 5 cut(s) 116, 189, 190, 201, 451
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 64, 202
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 5 cut(s) 116, 189, 190, 201, 451
BmsI GCATC 1 cut(s) 298
BpuMI CCSGG 3 cut(s) 189, 190, 201
BsaHI GRCGYC 2 cut(s) 159, 258
BsaJI CCNNGG 4 cut(s) 70, 188, 189, 450
BsaWI WCCGGW 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse1I ACTGG 3 cut(s) 344, 364, 402
BseBI CCWGG 2 cut(s) 116, 451
BseDI CCNNGG 4 cut(s) 70, 188, 189, 450
BseGI GGATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 51, 74, 161, 529
BseNI ACTGG 3 cut(s) 344, 364, 402
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 2 cut(s) 35, 51
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 66, 204, 449
BsiEI CGRYCG 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 16, 189, 200, 422
BsnI GGCC 3 cut(s) 66, 204, 449
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 2 cut(s) 418, 511
BspACI CCGC 2 cut(s) 67, 219
BspANI GGCC 3 cut(s) 66, 204, 449
BspCNI CTCAG 4 cut(s) 52, 75, 162, 528
BspFNI CGCG 2 cut(s) 35, 51
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 2 cut(s) 413, 426
BsrI ACTGG 3 cut(s) 344, 364, 402
BssECI CCNNGG 4 cut(s) 70, 188, 189, 450
BssMI GATC 2 cut(s) 418, 511
BssNI GRCGYC 2 cut(s) 159, 258
Bst2UI CCWGG 2 cut(s) 116, 451
Bst4CI ACNGT 3 cut(s) 239, 350, 373
BstACI GRCGYC 2 cut(s) 159, 258
BstC8I GCNNGC 3 cut(s) 49, 206, 535
BstDEI CTNAG 4 cut(s) 60, 83, 170, 515
BstDSI CCRYGG 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 2 cut(s) 35, 51
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 421, 514
BstMBI GATC 2 cut(s) 418, 511
BstMCI CGRYCG 1 cut(s) 20
BstNI CCWGG 2 cut(s) 116, 451
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 114, 187, 188, 199, 449
BstUI CGCG 2 cut(s) 35, 51
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 3 cut(s) 66, 204, 449
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 3 cut(s) 355, 369, 409
Cac8I GCNNGC 3 cut(s) 49, 206, 535
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 64, 202
Cfr9I CCCGGG 1 cut(s) 188
CseI GACGC 5 cut(s) 40, 41, 53, 173, 266
Csp6I GTAC 6 cut(s) 22, 40, 75, 324, 468, 477
CviAII CATG 1 cut(s) 366
CviJI RGCY 6 cut(s) 66, 151, 204, 425, 449, 537
CviKI_1 RGCY 6 cut(s) 66, 151, 204, 425, 449, 537
CviQI GTAC 6 cut(s) 22, 40, 75, 324, 468, 477
DdeI CTNAG 4 cut(s) 60, 83, 170, 515
DpnI GATC 2 cut(s) 420, 513
DpnII GATC 2 cut(s) 418, 511
DrdI GACNNNNNNGTC 2 cut(s) 50, 125
DseDI GACNNNNNNGTC 2 cut(s) 50, 125
Eco57I CTGAAG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 114, 449
FaeI CATG 1 cut(s) 369
FaiI YATR 3 cut(s) 367, 510, 568
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FatI CATG 1 cut(s) 365
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 67, 219
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 67, 219
FspBI CTAG 1 cut(s) 495
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 67, 219
HaeIII GGCC 3 cut(s) 66, 204, 449
HapII CCGG 4 cut(s) 16, 189, 200, 422
HgaI GACGC 5 cut(s) 40, 41, 53, 173, 266
HhaI GCGC 1 cut(s) 218
Hin1I GRCGYC 2 cut(s) 159, 258
Hin1II CATG 1 cut(s) 369
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 535
HinfI GANTC 2 cut(s) 87, 459
HpaII CCGG 4 cut(s) 16, 189, 200, 422
HphI GGTGA 2 cut(s) 251, 289
Hpy166II GTNNAC 2 cut(s) 130, 163
Hpy188I TCNGA 5 cut(s) 171, 269, 294, 429, 518
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 130, 163
Hpy99I CGWCG 9 cut(s) 35, 47, 56, 113, 164, 167, 233, 239, 260
HpyAV CCTTC 3 cut(s) 277, 295, 337
HpyCH4III ACNGT 3 cut(s) 239, 350, 373
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 4 cut(s) 318, 369, 387, 394
HpyF3I CTNAG 4 cut(s) 60, 83, 170, 515
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 2 cut(s) 159, 258
Hsp92II CATG 1 cut(s) 369
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 418, 511
LmnI GCTCC 2 cut(s) 156, 286
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 55, 239, 404
MalI GATC 2 cut(s) 420, 513
MboI GATC 2 cut(s) 418, 511
MboII GAAGA 3 cut(s) 157, 292, 422
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 2 cut(s) 413, 562
MluI ACGCGT 1 cut(s) 33
MnlI CCTC 6 cut(s) 55, 107, 165, 263, 344, 480
MspI CCGG 4 cut(s) 16, 189, 200, 422
MspR9I CCNGG 5 cut(s) 116, 189, 190, 201, 451
MvaI CCWGG 2 cut(s) 116, 451
MvnI CGCG 2 cut(s) 35, 51
NciI CCSGG 3 cut(s) 189, 190, 201
NdeII GATC 2 cut(s) 418, 511
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 3 cut(s) 55, 239, 404
PcsI WCGNNNNNNNCGW 5 cut(s) 39, 48, 51, 105, 117
PfeI GAWTC 2 cut(s) 87, 459
PkrI GCNGC 2 cut(s) 68, 220
Psp6I CCWGG 2 cut(s) 114, 449
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 114, 449
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 2 cut(s) 64, 202
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 6 cut(s) 23, 41, 76, 325, 469, 478
RsaNI GTAC 6 cut(s) 22, 40, 75, 324, 468, 477
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 2 cut(s) 67, 219
Sau3AI GATC 2 cut(s) 418, 511
Sau96I GGNCC 2 cut(s) 64, 202
ScaI AGTACT 1 cut(s) 469
ScrFI CCNGG 5 cut(s) 116, 189, 190, 201, 451
SduI GDGCHC 1 cut(s) 523
SetI ASST 5 cut(s) 153, 162, 246, 329, 539
SfaNI GCATC 1 cut(s) 298
SgrDI CGTCGACG 1 cut(s) 161
SmaI CCCGGG 1 cut(s) 190
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 2 cut(s) 413, 562
SsiI CCGC 2 cut(s) 67, 219
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 5 cut(s) 114, 187, 188, 199, 449
TaaI ACNGT 3 cut(s) 239, 350, 373
TaiI ACGT 1 cut(s) 162
TaqI TCGA 5 cut(s) 99, 162, 195, 336, 462
TasI AATT 2 cut(s) 413, 562
TatI WGTACW 2 cut(s) 467, 476
TauI GCSGC 2 cut(s) 69, 221
TfiI GAWTC 2 cut(s) 87, 459
TscAI CASTG 3 cut(s) 355, 376, 409
TseFI GTSAC 3 cut(s) 55, 239, 404
Tsp45I GTSAC 3 cut(s) 55, 239, 404
TspDTI ATGAA 2 cut(s) 319, 354
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 3 cut(s) 355, 376, 409
XapI RAATTY 1 cut(s) 562
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 495
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.