FvH4_6g40510

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000405
Physical Location & Seq
Forward (+)
32010622 .. 32012264
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40510.t1

Sequence Viewer

Length: 1047 bp
ATGGAAATAGAGTACAGGTCTGGAGTGGACGACGCATGGTACGCTGTCAAAATTTTGACAGAAGGCGACTATGGAGAACGCCTGAGAGTGAGGTTCTGCGAGTTCGGAGCCGAGTACGACGAGGTGTACGAGGGAGAGAACCTGACATCCGTTAAACACATGGAAGCTTTCGAGTCAAGGTTTAGGTCTGCATCTGTTCAAGTACAGGACTCGGAGTGCCCAAACGTGGTAGAGGGCATGCTCGTGTGTGCCGCAGTTTCAAATCGACCCGACGATTGTCGTTACTTTGATGCCGTTGTTAACAAGGTGAAACGTAAGAGGCATCGGATTGTGGAAGATGAAGAAGAATGCCGATGCGAGTTCATCCTCTTTTGGAGACACGGGCCAAACGGTGGAAGCCTTACGACTCGGTTCGTAGGAGATATCTGCAGAGTCCAGCCTCAAACGGAAGAAGTTCATCCACTTGTGACCTTGTTCCTACAAACAGTAAAGAGTAGGATCCGCAACAACGAGCTTAGCCATGTTCCTCCTTCTACTCTTCCCACAATACCTCAACATGCATCTTCGAGAGGAATGACGAAATTTTTTTCTGAAAGAGACGAGCATGACCAGGATAGGGGAGGGGTTTCATTCATAGTTGTGGTAAAGAACCTTGAGAAGGGGATCTCACCATTTACTATTATGGAATTCATACAGGAACAACTATGCATATCATGCCATGCATCTGTTTGGCCAAGCAAGCCGTCTGAACCATATGTCAAAGGAATGATCATGGTTAAGGGTAAAAATAATCTGGACAAGTTATCCCGCTTTCTTGACGATCCGGTTCAACTAATCATTTCCCCAAGTGGAAGGCCCTGGGTAATGACCGAAATGATACAATTAGATGAGACTCTAAGGATATCCGATCGAGGCTGCGAGCTGATGTCTCATGAAAGGACTATAATTTGCAACAAATTGAAACTTGTTAAATTTGGCAGTCAAGAATTCAAGAAAGCTAAACGGCTGAAGCAATTATTCAAGCAACGTGAAGCAAGATTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

349

Amino Acids

40.16

Weight (kDa)

6.77

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 143 5e-33 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AciI CCGC 3 cut(s) 252, 502, 808
AclWI GGATC 4 cut(s) 493, 506, 671, 815
AcoI YGGCCR 1 cut(s) 731
AcsI RAATTY 5 cut(s) 51, 581, 686, 971, 986
AcuI CTGAAG 1 cut(s) 1028
AfaI GTAC 5 cut(s) 14, 41, 116, 128, 204
AfiI CCNNNNNNNGG 4 cut(s) 226, 392, 616, 658
AgsI TTSAA 6 cut(s) 200, 261, 830, 961, 991, 1021
AjnI CCWGG 2 cut(s) 609, 857
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 4 cut(s) 167, 514, 922, 998
AluI AGCT 4 cut(s) 167, 514, 922, 998
Alw26I GTCTC 4 cut(s) 370, 591, 884, 933
AlwI GGATC 4 cut(s) 493, 506, 671, 815
AoxI GGCC 3 cut(s) 383, 731, 854
ApeKI GCWGC 1 cut(s) 915
ApoI RAATTY 5 cut(s) 51, 581, 686, 971, 986
Asp700I GAANNNNTTC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 383, 855
AsuHPI GGTGA 2 cut(s) 319, 660
BaeGI GKGCMC 1 cut(s) 221
BalI TGGCCA 1 cut(s) 733
BamHI GGATCC 1 cut(s) 498
BarI GAAGNNNNNNTAC 1 cut(s) 1023
BauI CACGAG 1 cut(s) 242
BbvI GCAGC 1 cut(s) 902
BceAI ACGGC 3 cut(s) 278, 727, 1019
BciT130I CCWGG 2 cut(s) 611, 859
BclI TGATCA 1 cut(s) 768
BcoDI GTCTC 4 cut(s) 370, 591, 884, 933
BfmI CTRYAG 1 cut(s) 427
BisI GCNGC 2 cut(s) 252, 916
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 2 cut(s) 253, 917
Bme1390I CCNGG 2 cut(s) 611, 859
BmgT120I GGNCC 2 cut(s) 383, 855
BmiI GGNNCC 2 cut(s) 109, 500
BmrFI CCNGG 2 cut(s) 611, 859
BmsI GCATC 6 cut(s) 200, 280, 331, 344, 569, 731
BoxI GACNNNNGTC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 42
Bpu1102I GCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 857, 858
BsaWI WCCGGW 1 cut(s) 823
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 392, 616, 658
BseBI CCWGG 2 cut(s) 611, 859
BseDI CCNNGG 2 cut(s) 857, 858
BseGI GGATG 3 cut(s) 146, 363, 457
BseLI CCNNNNNNNGG 4 cut(s) 226, 392, 616, 658
BseMII CTCAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 1 cut(s) 902
Bsh1285I CGRYCG 1 cut(s) 910
BshFI GGCC 3 cut(s) 385, 733, 856
BsiEI CGRYCG 1 cut(s) 910
BsiSI CCGG 1 cut(s) 824
BslI CCNNNNNNNGG 4 cut(s) 226, 392, 616, 658
BsmAI GTCTC 4 cut(s) 370, 591, 884, 933
BsmBI CGTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 3 cut(s) 385, 733, 856
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 5 cut(s) 498, 663, 768, 820, 907
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 3 cut(s) 252, 502, 808
BspANI GGCC 3 cut(s) 385, 733, 856
BspCNI CTCAG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 2 cut(s) 109, 500
BspMAI CTGCAG 1 cut(s) 431
BspPI GGATC 4 cut(s) 493, 506, 671, 815
BssECI CCNNGG 2 cut(s) 857, 858
BssMI GATC 5 cut(s) 498, 663, 768, 820, 907
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 611, 859
Bst4CI ACNGT 2 cut(s) 392, 487
Bst6I CTCTTC 1 cut(s) 543
BstAPI GCANNNNNTGC 1 cut(s) 714
BstC8I GCNNGC 3 cut(s) 239, 740, 920
BstDEI CTNAG 3 cut(s) 83, 515, 896
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 146, 363, 457
BstKTI GATC 5 cut(s) 501, 666, 771, 823, 910
BstMAI GTCTC 4 cut(s) 370, 591, 884, 933
BstMBI GATC 5 cut(s) 498, 663, 768, 820, 907
BstMCI CGRYCG 1 cut(s) 910
BstMWI GCNNNNNNNGC 3 cut(s) 41, 714, 739
BstNI CCWGG 2 cut(s) 611, 859
BstNSI RCATGY 2 cut(s) 241, 560
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 609, 857
BstSFI CTRYAG 1 cut(s) 427
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 902
BstX2I RGATCY 2 cut(s) 498, 663
BstYI RGATCY 2 cut(s) 498, 663
BsuRI GGCC 3 cut(s) 385, 733, 856
BtsCI GGATG 3 cut(s) 146, 363, 457
Cac8I GCNNGC 3 cut(s) 239, 740, 920
CciI TCATGA 1 cut(s) 931
Cfr13I GGNCC 2 cut(s) 383, 855
CseI GACGC 1 cut(s) 41
Csp6I GTAC 5 cut(s) 13, 40, 115, 127, 203
CviQI GTAC 5 cut(s) 13, 40, 115, 127, 203
DdeI CTNAG 3 cut(s) 83, 515, 896
DpnI GATC 5 cut(s) 500, 665, 770, 822, 909
DpnII GATC 5 cut(s) 498, 663, 768, 820, 907
EaeI YGGCCR 1 cut(s) 731
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco32I GATATC 2 cut(s) 424, 903
Eco57I CTGAAG 1 cut(s) 1028
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO109I RGGNCCY 1 cut(s) 855
EcoRI GAATTC 2 cut(s) 686, 986
EcoRII CCWGG 2 cut(s) 609, 857
EcoRV GATATC 2 cut(s) 424, 903
EcoT22I ATGCAT 3 cut(s) 562, 710, 724
Esp3I CGTCTC 1 cut(s) 591
FauI CCCGC 1 cut(s) 815
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 768
Fnu4HI GCNGC 2 cut(s) 252, 916
FokI GGATG 3 cut(s) 133, 350, 444
Fsp4HI GCNGC 2 cut(s) 252, 916
GluI GCNGC 2 cut(s) 252, 916
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 3 cut(s) 385, 733, 856
HapII CCGG 1 cut(s) 824
HgaI GACGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 5 cut(s) 173, 209, 406, 432, 892
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 1 cut(s) 824
HphI GGTGA 2 cut(s) 319, 660
Hpy166II GTNNAC 3 cut(s) 28, 127, 301
Hpy188I TCNGA 6 cut(s) 107, 214, 327, 592, 748, 907
Hpy188III TCNNGA 7 cut(s) 21, 567, 794, 815, 932, 983, 991
Hpy8I GTNNAC 3 cut(s) 28, 127, 301
Hpy99I CGWCG 3 cut(s) 35, 122, 275
HpyAV CCTTC 4 cut(s) 56, 540, 652, 846
HpyCH4III ACNGT 2 cut(s) 392, 487
HpyCH4IV ACGT 3 cut(s) 225, 313, 1027
HpyCH4V TGCA 6 cut(s) 191, 429, 560, 708, 722, 951
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 714, 739
HpyF3I CTNAG 3 cut(s) 83, 515, 896
HpySE526I ACGT 3 cut(s) 225, 313, 1027
Ksp22I TGATCA 1 cut(s) 768
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 5 cut(s) 498, 663, 768, 820, 907
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 1 cut(s) 902
LweI GCATC 6 cut(s) 200, 280, 331, 344, 569, 731
MaeII ACGT 3 cut(s) 225, 313, 1027
MaeIII GTNAC 2 cut(s) 281, 466
MalI GATC 5 cut(s) 500, 665, 770, 822, 909
MboI GATC 5 cut(s) 498, 663, 768, 820, 907
MboII GAAGA 6 cut(s) 347, 353, 356, 461, 530, 555
MflI RGATCY 2 cut(s) 498, 663
MhlI GDGCHC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 733
MluCI AATT 9 cut(s) 51, 581, 686, 881, 945, 956, 971, 986, 1013
MluNI TGGCCA 1 cut(s) 733
MlyI GAGTC 5 cut(s) 182, 203, 400, 441, 886
Mox20I TGGCCA 1 cut(s) 733
Mph1103I ATGCAT 3 cut(s) 562, 710, 724
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 733
MseI TTAA 4 cut(s) 153, 300, 777, 969
MslI CAYNNNNRTG 2 cut(s) 242, 638
Msp20I TGGCCA 1 cut(s) 733
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 2 cut(s) 611, 859
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 2 cut(s) 611, 859
MwoI GCNNNNNNNGC 3 cut(s) 41, 714, 739
NdeI CATATG 1 cut(s) 754
NdeII GATC 5 cut(s) 498, 663, 768, 820, 907
NlaIV GGNNCC 2 cut(s) 109, 500
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 466
NsiI ATGCAT 3 cut(s) 562, 710, 724
NspI RCATGY 2 cut(s) 241, 560
PaeI GCATGC 1 cut(s) 241
PagI TCATGA 1 cut(s) 931
PasI CCCWGGG 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 2 cut(s) 253, 917
Ple19I CGATCG 1 cut(s) 910
PleI GAGTC 5 cut(s) 181, 203, 400, 440, 886
PpsI GAGTC 5 cut(s) 181, 203, 400, 440, 886
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 609, 857
PspGI CCWGG 2 cut(s) 609, 857
PspN4I GGNNCC 2 cut(s) 109, 500
PspPI GGNCC 2 cut(s) 383, 855
PstI CTGCAG 1 cut(s) 431
PsuI RGATCY 2 cut(s) 498, 663
PvuI CGATCG 1 cut(s) 910
RsaI GTAC 5 cut(s) 14, 41, 116, 128, 204
RsaNI GTAC 5 cut(s) 13, 40, 115, 127, 203
RseI CAYNNNNRTG 2 cut(s) 242, 638
SaqAI TTAA 4 cut(s) 153, 300, 777, 969
SatI GCNGC 2 cut(s) 252, 916
Sau3AI GATC 5 cut(s) 498, 663, 768, 820, 907
Sau96I GGNCC 2 cut(s) 383, 855
SchI GAGTC 5 cut(s) 182, 203, 400, 441, 886
ScrFI CCNGG 2 cut(s) 611, 859
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 6 cut(s) 200, 280, 331, 344, 569, 731
SfcI CTRYAG 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 242, 638
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
SphI GCATGC 1 cut(s) 241
Sse9I AATT 9 cut(s) 51, 581, 686, 881, 945, 956, 971, 986, 1013
SsiI CCGC 3 cut(s) 252, 502, 808
StyD4I CCNGG 2 cut(s) 609, 857
TaaI ACNGT 2 cut(s) 392, 487
TaiI ACGT 3 cut(s) 228, 316, 1030
TaqI TCGA 4 cut(s) 171, 265, 566, 910
TaqII GACCGA 1 cut(s) 884
TasI AATT 9 cut(s) 51, 581, 686, 881, 945, 956, 971, 986, 1013
TatI WGTACW 2 cut(s) 12, 202
TauI GCSGC 1 cut(s) 254
Tru1I TTAA 4 cut(s) 153, 300, 777, 969
Tru9I TTAA 4 cut(s) 153, 300, 777, 969
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 915
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 7 cut(s) 352, 354, 446, 618, 622, 679, 948
TspGWI ACGGA 2 cut(s) 139, 461
Van91I CCANNNNNTGG 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 5 cut(s) 51, 581, 686, 971, 986
XceI RCATGY 2 cut(s) 241, 560
XmnI GAANNNNTTC 1 cut(s) 453
Zsp2I ATGCAT 3 cut(s) 562, 710, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.