RchiOBHm_Chr2g0155531

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000405
Physical Location & Seq
Reverse (-)
72406930 .. 72407342
413 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52440

Sequence Viewer

Length: 321 bp
ATGGAAGGAGAAGAAGAATGCCTATGTGACTTCGTTCTCTTTTGGAAACATGGGCCAAAGGGCGGAAGCCTTACAACTCAACCCGTCGGAGATATCTGTAGAGTCCAACCTCAGACGGAAGAAGTAGATCAACTTCTGGACTTGTTTCTACAAACGGCAAGGAGTAGGATCCAAACCAACGAGTCAAGCCTTGTTCTTGCTACTTTTTCCTCTGTACCTCATGAGGCTTCTTTGGAAGGAATGAGGGAAAATCCATTTGAAAGAGACCAGGATATGGGCGGGGTTTCATACAGTGGTGGACGCAGTAACTTCTTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

106

Amino Acids

11.78

Weight (kDa)

4.48

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AciI CCGC 2 cut(s) 63, 279
AclWI GGATC 2 cut(s) 163, 176
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 62, 274
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 2 cut(s) 163, 176
AoxI GGCC 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 53
BamHI GGATCC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 274
BseBI CCWGG 1 cut(s) 269
BseLI CCNNNNNNNGG 2 cut(s) 62, 274
BseMII CTCAG 1 cut(s) 125
BshFI GGCC 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 62, 274
BsmAI GTCTC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 127, 168
BspACI CCGC 2 cut(s) 63, 279
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 2 cut(s) 163, 176
BspTNI GGTCTC 1 cut(s) 258
BssMI GATC 2 cut(s) 127, 168
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 111
BstKTI GATC 2 cut(s) 130, 171
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 127, 168
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 298
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 215
CviAII CATG 2 cut(s) 50, 221
CviJI RGCY 4 cut(s) 55, 69, 189, 227
CviKI_1 RGCY 4 cut(s) 55, 69, 189, 227
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 129, 170
DpnII GATC 2 cut(s) 127, 168
EciI GGCGGA 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 94
FaeI CATG 2 cut(s) 53, 224
FaiI YATR 6 cut(s) 25, 51, 222, 275, 289, 319
FatI CATG 2 cut(s) 49, 220
FauI CCCGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 55
HgaI GACGC 1 cut(s) 309
Hin1II CATG 2 cut(s) 53, 224
HinfI GANTC 2 cut(s) 102, 182
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 89, 114
Hpy188III TCNNGA 2 cut(s) 137, 221
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 53, 224
Kzo9I GATC 2 cut(s) 127, 168
LpnPI CCDG 3 cut(s) 122, 254, 281
MaeIII GTNAC 2 cut(s) 26, 305
MalI GATC 2 cut(s) 129, 170
MboI GATC 2 cut(s) 127, 168
MboII GAAGA 3 cut(s) 23, 26, 131
MflI RGATCY 1 cut(s) 168
MlyI GAGTC 2 cut(s) 111, 191
MmeI TCCRAC 2 cut(s) 67, 130
MnlI CCTC 5 cut(s) 120, 217, 220, 228, 237
MseI TTAA 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 269
NdeII GATC 2 cut(s) 127, 168
NlaIII CATG 2 cut(s) 53, 224
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 26
PagI TCATGA 1 cut(s) 220
PctI GAATGC 1 cut(s) 23
PflMI CCANNNNNTGG 1 cut(s) 274
PleI GAGTC 2 cut(s) 110, 190
PpsI GAGTC 2 cut(s) 110, 190
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 2 cut(s) 127, 168
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 2 cut(s) 111, 191
ScrFI CCNGG 1 cut(s) 269
SetI ASST 2 cut(s) 112, 220
SfcI CTRYAG 1 cut(s) 97
SsiI CCGC 2 cut(s) 63, 279
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 293
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.