Prupe.3G196400_v2.0.a1

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000405
Physical Location & Seq
Forward (+)
20715026 .. 20722699
7674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G196400.1

Sequence Viewer

Length: 810 bp
ATGGCGTTGGAGTTCAGGTCGCAGATGGACGACGCGTGGTACGACGCACGGATAGTGATGGACGGCTACGATTGCCTGAGGGTGAAGTTCATCGGCTTCCCCGACGACCACGACGAGGTTTTCGACGCCAATAACTTGACTTCCTTCAAAGATATCGCCGAGTTCAGGCGCCGGTTCAGGCCGGTGTCCGTACAGGTTCAGGATAATGAGTGCTCGCAGGTAGCAAAGGGCACGCTCGTCTGTGTCGCCCACGCAGTCTGTCCCGACGACCGCCGCTTCTACGACGCCGTCGTCTACAAGGTTTTGCATGAGGAACATCGGTTTGTAAAAGGAGAAGAAGAATGCCCATGCAGCTTCATTCTCTTTTGGAGACACGGTCCAAAAGCTGGGTGTTTAACTGTTCAAGATCTTGAAAACATATGCAGAGTCCAGCCTCGTAGAAGCAAAATGAATCCACTTCTGACCTCTTTTCTAGAAACAGCCAGGGAGAAAATTGAAATCACCCTTTCTAAAATTTGTGCAACTCCTCATGAACCTGCCTATGATGAAAAAGCTTGTAGGCCCAGCGTTTCTCAACGTTTAAAGCAGGATACAAGCACTTCAAGGCGACCCTCAAGCCTTATCTCGTCTCTTAAAAGGTTTGTACAAATTGCCCTTAAAACCTTTTCCAAATGCATTAGTTTCTTAATCTTTTACAGTTTCCTCAAGCCAGAAATGAATGGAAATCCTTCGCAAAGGGCTGGACATGTCAGGGAGATCGAAGGGACCCCCCATATGATAATCGTTGACAATCTTGAGAGGGGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

270

Amino Acids

30.99

Weight (kDa)

7.55

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 808
AasI GACNNNNNNGTC 1 cut(s) 290
Acc36I ACCTGC 2 cut(s) 208, 544
AccB1I GGYRCC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 386
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 271, 274
AclI AACGTT 1 cut(s) 577
AcsI RAATTY 1 cut(s) 513
AcyI GRCGYC 3 cut(s) 126, 169, 285
AfaI GTAC 3 cut(s) 41, 192, 645
AfiI CCNNNNNNNGG 3 cut(s) 115, 165, 386
AflIII ACRYGT 2 cut(s) 33, 745
AgsI TTSAA 5 cut(s) 148, 404, 413, 497, 603
AjnI CCWGG 1 cut(s) 482
AluBI AGCT 3 cut(s) 354, 386, 554
AluI AGCT 3 cut(s) 354, 386, 554
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 364, 633
AoxI GGCC 2 cut(s) 179, 560
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 1 cut(s) 513
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp700I GAANNNNTTC 1 cut(s) 727
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 377, 561, 765
AsuHPI GGTGA 2 cut(s) 94, 493
AvaII GGWCC 2 cut(s) 377, 765
AxyI CCTNAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 363
BccI CCATC 2 cut(s) 19, 52
BceAI ACGGC 2 cut(s) 79, 272
BciT130I CCWGG 1 cut(s) 484
BciVI GTATCC 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 364, 633
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 172
BfuAI ACCTGC 2 cut(s) 208, 544
BfuI GTATCC 1 cut(s) 583
BglII AGATCT 1 cut(s) 406
BisI GCNGC 2 cut(s) 274, 352
BlsI GCNGC 2 cut(s) 275, 353
Bme1390I CCNGG 1 cut(s) 484
Bme18I GGWCC 2 cut(s) 377, 765
BmgT120I GGNCC 3 cut(s) 377, 561, 765
BmiI GGNNCC 3 cut(s) 170, 766, 767
BmrFI CCNGG 1 cut(s) 484
BpuEI CTTGAG 2 cut(s) 598, 689
BsaHI GRCGYC 3 cut(s) 126, 169, 285
BsaJI CCNNGG 1 cut(s) 483
BsaXI ACNNNNNCTCC 3 cut(s) 32, 361, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 165, 386
Bse118I RCCGGY 2 cut(s) 171, 181
Bse21I CCTNAGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 484
BseDI CCNNGG 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 115, 165, 386
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 516
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 1 cut(s) 363
BseYI CCCAGC 2 cut(s) 386, 563
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 181, 562
BshNI GGYRCC 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 172, 182
BslFI GGGAC 2 cut(s) 246, 778
BslI CCNNNNNNNGG 3 cut(s) 115, 165, 386
BsmAI GTCTC 2 cut(s) 364, 633
BsmBI CGTCTC 1 cut(s) 633
BsmFI GGGAC 2 cut(s) 246, 778
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 181, 562
Bsp1286I GDGCHC 2 cut(s) 215, 233
Bsp1407I TGTACA 1 cut(s) 643
Bsp143I GATC 2 cut(s) 406, 756
BspACI CCGC 2 cut(s) 271, 274
BspANI GGCC 2 cut(s) 181, 562
BspCNI CTCAG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 170, 766, 767
BspMI ACCTGC 2 cut(s) 208, 544
BspT107I GGYRCC 1 cut(s) 168
BsrFI RCCGGY 2 cut(s) 171, 181
BsrGI TGTACA 1 cut(s) 643
BssAI RCCGGY 2 cut(s) 171, 181
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 2 cut(s) 406, 756
BssNI GRCGYC 3 cut(s) 126, 169, 285
Bst2UI CCWGG 1 cut(s) 484
Bst4CI ACNGT 3 cut(s) 377, 400, 698
BstACI GRCGYC 3 cut(s) 126, 169, 285
BstAUI TGTACA 1 cut(s) 643
BstC8I GCNNGC 2 cut(s) 215, 233
BstDEI CTNAG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 409, 759
BstMAI GTCTC 2 cut(s) 364, 633
BstMBI GATC 2 cut(s) 406, 756
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 72, 351
BstNI CCWGG 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 1 cut(s) 482
BstSLI GKGCMC 1 cut(s) 233
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 77
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 2 cut(s) 181, 562
BveI ACCTGC 2 cut(s) 208, 544
Cac8I GCNNGC 2 cut(s) 215, 233
CciI TCATGA 1 cut(s) 529
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 2 cut(s) 171, 181
Cfr13I GGNCC 3 cut(s) 377, 561, 765
CseI GACGC 4 cut(s) 41, 53, 134, 293
Csp6I GTAC 3 cut(s) 40, 191, 644
CviAII CATG 4 cut(s) 308, 348, 530, 746
CviQI GTAC 3 cut(s) 40, 191, 644
DdeI CTNAG 1 cut(s) 77
DinI GGCGCC 1 cut(s) 170
DpnI GATC 2 cut(s) 408, 758
DpnII GATC 2 cut(s) 406, 756
DraI TTTAAA 1 cut(s) 582
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 377, 765
Eco81I CCTNAGG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 482
EcoRV GATATC 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 677
EgeI GGCGCC 1 cut(s) 170
EheI GGCGCC 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 4 cut(s) 311, 351, 533, 749
FaqI GGGAC 2 cut(s) 246, 778
FatI CATG 4 cut(s) 307, 347, 529, 745
FauNDI CATATG 2 cut(s) 419, 774
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 274, 352
Fsp4HI GCNGC 2 cut(s) 274, 352
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 274, 352
GsaI CCCAGC 2 cut(s) 390, 567
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 2 cut(s) 181, 562
HapII CCGG 2 cut(s) 172, 182
HgaI GACGC 4 cut(s) 41, 53, 134, 293
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 3 cut(s) 126, 169, 285
Hin1II CATG 4 cut(s) 311, 351, 533, 749
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 2 cut(s) 426, 451
HpaII CCGG 2 cut(s) 172, 182
HphI GGTGA 2 cut(s) 94, 493
Hpy166II GTNNAC 2 cut(s) 295, 787
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 7 cut(s) 200, 263, 404, 410, 473, 530, 794
Hpy8I GTNNAC 2 cut(s) 295, 787
Hpy99I CGWCG 8 cut(s) 35, 47, 107, 116, 128, 269, 287, 293
HpyAV CCTTC 3 cut(s) 154, 738, 755
HpyCH4III ACNGT 3 cut(s) 377, 400, 698
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 5 cut(s) 307, 351, 423, 521, 675
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 351
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 577
Hsp92I GRCGYC 3 cut(s) 126, 169, 285
Hsp92II CATG 4 cut(s) 311, 351, 533, 749
HspAI GCGC 1 cut(s) 169
KasI GGCGCC 1 cut(s) 168
KflI GGGWCCC 1 cut(s) 765
Kzo9I GATC 2 cut(s) 406, 756
Lsp1109I GCAGC 1 cut(s) 363
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 577
MalI GATC 2 cut(s) 408, 758
MboI GATC 2 cut(s) 406, 756
MboII GAAGA 2 cut(s) 347, 350
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 215, 233
MluCI AATT 3 cut(s) 492, 513, 648
MluI ACGCGT 1 cut(s) 33
Mly113I GGCGCC 1 cut(s) 169
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 9 cut(s) 72, 109, 304, 444, 475, 537, 622, 713, 792
Mph1103I ATGCAT 1 cut(s) 677
MroXI GAANNNNTTC 1 cut(s) 727
MseI TTAA 5 cut(s) 395, 581, 633, 657, 686
MspI CCGG 2 cut(s) 172, 182
MspR9I CCNGG 1 cut(s) 484
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 1 cut(s) 484
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 72, 351
NarI GGCGCC 1 cut(s) 169
NdeI CATATG 2 cut(s) 419, 774
NdeII GATC 2 cut(s) 406, 756
NlaIII CATG 4 cut(s) 311, 351, 533, 749
NlaIV GGNNCC 3 cut(s) 170, 766, 767
NmeAIII GCCGAG 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 1 cut(s) 749
PagI TCATGA 1 cut(s) 529
PciI ACATGT 1 cut(s) 745
PcsI WCGNNNNNNNCGW 5 cut(s) 39, 99, 111, 120, 288
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 727
PfeI GAWTC 1 cut(s) 451
PflFI GACNNNGTC 2 cut(s) 287, 375
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 2 cut(s) 275, 353
PleI GAGTC 1 cut(s) 434
PluTI GGCGCC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 765
PscI ACATGT 1 cut(s) 745
PsiI TTATAA 1 cut(s) 808
Psp1406I AACGTT 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 482
PspFI CCCAGC 2 cut(s) 386, 563
PspGI CCWGG 1 cut(s) 482
PspN4I GGNNCC 3 cut(s) 170, 766, 767
PspPI GGNCC 3 cut(s) 377, 561, 765
PspPPI RGGWCCY 1 cut(s) 765
PsuI RGATCY 1 cut(s) 406
PsyI GACNNNGTC 2 cut(s) 287, 375
RsaI GTAC 3 cut(s) 41, 192, 645
RsaNI GTAC 3 cut(s) 40, 191, 644
SaqAI TTAA 5 cut(s) 395, 581, 633, 657, 686
SatI GCNGC 2 cut(s) 274, 352
Sau3AI GATC 2 cut(s) 406, 756
Sau96I GGNCC 3 cut(s) 377, 561, 765
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 2 cut(s) 215, 233
SfoI GGCGCC 1 cut(s) 170
SinI GGWCC 2 cut(s) 377, 765
SmlI CTYRAG 3 cut(s) 613, 704, 794
SmoI CTYRAG 3 cut(s) 613, 704, 794
Sse9I AATT 3 cut(s) 492, 513, 648
SsiI CCGC 2 cut(s) 271, 274
SspDI GGCGCC 1 cut(s) 168
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 482
TaaI ACNGT 3 cut(s) 377, 400, 698
TaiI ACGT 1 cut(s) 580
TaqI TCGA 2 cut(s) 123, 759
TasI AATT 3 cut(s) 492, 513, 648
TatI WGTACW 1 cut(s) 643
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 5 cut(s) 395, 581, 633, 657, 686
Tru9I TTAA 5 cut(s) 395, 581, 633, 657, 686
TseI GCWGC 1 cut(s) 351
TspDTI ATGAA 6 cut(s) 79, 346, 464, 546, 561, 731
TspGWI ACGGA 2 cut(s) 64, 178
Tth111I GACNNNGTC 2 cut(s) 287, 375
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 2 cut(s) 377, 765
XapI RAATTY 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 472
XceI RCATGY 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 1 cut(s) 473
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.