Rroxscaffold_2G00093480

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000405
Physical Location & Seq
Reverse (-)
14828315 .. 14833183
4869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093480.1

Sequence Viewer

Length: 729 bp
ATGGCTCTAAGCGGCTCTGTTGAAGGAATGGGTGCAGATTCTGATTCATTAAGGATCTCTTATGAAGCTGCTCATCCCAAAAAGGACTACAAGGTTACAAGTCCGCCCAAGGAATCTTTGCCTTTGAGCTGCTACGTTGAAGGAATAAGTGATAATGCTTCTGATATGGATGGACGAGATGACATGGATGTAGGAGGGGCTCCCTATATGATAATAGTTGAGAACCTAGAGAAGGAAATATCACCGTTTACAATTATGGAATTTATACACCAGCAAGTTTCAATCACATGTCAAGTCTCTGTTTCGCCAAGTAAGTCATCGGAGTTGTATACACGTGCAATTATCCTATTGGACAGCAAAAATAATCTTGAGAAGTTGTCCGACTTTCTGGAGAGTCCAGATCACATCATCATTTCCTCCATAGGAAGGCCTTGGCTCATGACTGAGAAAAGACTATTACCTGAGACACTAAGGGCATCAATCCAAACCTTATCTCAGATGGCATTGAAGACAAGAACTCTAAATAACAATGAGTTGAATGTTGTCTTTTCTGGGAGTCACGAATACATGGAAGCTAAAGAGCAACAAAAATTGTTTAAAGAGTTCACTGAACACCAGTGTGGACTTCAGCGGAGGTTACAACTTGAAGAGGAAAAGATCTCAAGGAAGTACAGGGGGAGGGGTCAAGGCACACTCTGTACATTTACATTTGCCTGTGAAAGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

5.37

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 329
AciI CCGC 3 cut(s) 12, 104, 631
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 611
AcvI CACGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 671, 700
AfiI CCNNNNNNNGG 2 cut(s) 232, 426
AflIII ACRYGT 2 cut(s) 287, 332
AgsI TTSAA 6 cut(s) 23, 140, 282, 508, 538, 647
AleI CACNNNNGTG 1 cut(s) 618
AluBI AGCT 3 cut(s) 68, 129, 575
AluI AGCT 3 cut(s) 68, 129, 575
Alw26I GTCTC 2 cut(s) 301, 458
AlwI GGATC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 68, 129
ApoI RAATTY 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 234
BanII GRGCYC 1 cut(s) 202
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 515
BbvI GCAGC 2 cut(s) 55, 116
BccI CCATC 2 cut(s) 164, 493
BcoDI GTCTC 2 cut(s) 301, 458
BfaI CTAG 1 cut(s) 227
BglII AGATCT 1 cut(s) 657
BisI GCNGC 3 cut(s) 13, 69, 130
BlsI GCNGC 3 cut(s) 14, 70, 131
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 389, 646
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 108, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 426
Bse1I ACTGG 1 cut(s) 616
BseDI CCNNGG 2 cut(s) 108, 431
BseGI GGATG 3 cut(s) 73, 175, 193
BseLI CCNNNNNNNGG 2 cut(s) 232, 426
BseMII CTCAG 3 cut(s) 435, 453, 509
BseNI ACTGG 1 cut(s) 616
BseXI GCAGC 2 cut(s) 55, 116
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 430
BslI CCNNNNNNNGG 2 cut(s) 232, 426
BsmAI GTCTC 2 cut(s) 301, 458
BsnI GGCC 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 698
Bsp143I GATC 3 cut(s) 54, 400, 657
BspACI CCGC 3 cut(s) 12, 104, 631
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 3 cut(s) 436, 454, 508
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 698
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 108, 431
BssMI GATC 3 cut(s) 54, 400, 657
BssNAI GTATAC 1 cut(s) 330
BssT1I CCWWGG 2 cut(s) 108, 431
Bst1107I GTATAC 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 642
BstAUI TGTACA 1 cut(s) 698
BstBAI YACGTR 1 cut(s) 335
BstDEI CTNAG 5 cut(s) 8, 444, 462, 470, 495
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 3 cut(s) 73, 175, 193
BstKTI GATC 3 cut(s) 57, 403, 660
BstMAI GTCTC 2 cut(s) 301, 458
BstMBI GATC 3 cut(s) 54, 400, 657
BstNSI RCATGY 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 55, 116
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 2 cut(s) 54, 657
BstYI RGATCY 2 cut(s) 54, 657
BstZ17I GTATAC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 430
BtsCI GGATG 3 cut(s) 73, 175, 193
BtsIMutI CAGTG 2 cut(s) 606, 623
CaiI CAGNNNCTG 1 cut(s) 41
CciI TCATGA 1 cut(s) 438
Csp6I GTAC 2 cut(s) 670, 699
CviAII CATG 4 cut(s) 184, 288, 439, 568
CviJI RGCY 8 cut(s) 5, 15, 68, 129, 200, 430, 436, 575
CviKI_1 RGCY 8 cut(s) 5, 15, 68, 129, 200, 430, 436, 575
CviQI GTAC 2 cut(s) 670, 699
DdeI CTNAG 5 cut(s) 8, 444, 462, 470, 495
DpnI GATC 3 cut(s) 56, 402, 659
DpnII GATC 3 cut(s) 54, 400, 657
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EciI GGCGGA 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 108, 431
Eco147I AGGCCT 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 611
Eco72I CACGTG 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoT14I CCWWGG 2 cut(s) 108, 431
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 108, 431
FaeI CATG 4 cut(s) 187, 291, 442, 571
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 4 cut(s) 183, 287, 438, 567
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 3 cut(s) 13, 69, 130
FokI GGATG 3 cut(s) 60, 182, 200
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 3 cut(s) 13, 69, 130
FspBI CTAG 1 cut(s) 227
GluI GCNGC 3 cut(s) 13, 69, 130
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 430
Hin1II CATG 4 cut(s) 187, 291, 442, 571
HinfI GANTC 5 cut(s) 38, 44, 113, 394, 556
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 4 cut(s) 249, 330, 606, 623
Hpy188I TCNGA 5 cut(s) 43, 163, 322, 382, 498
Hpy188III TCNNGA 5 cut(s) 368, 389, 398, 439, 560
Hpy8I GTNNAC 4 cut(s) 249, 330, 606, 623
HpyAV CCTTC 4 cut(s) 17, 134, 226, 420
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 2 cut(s) 135, 334
HpyCH4V TGCA 2 cut(s) 35, 338
HpyF3I CTNAG 5 cut(s) 8, 444, 462, 470, 495
HpySE526I ACGT 2 cut(s) 135, 334
Hsp92II CATG 4 cut(s) 187, 291, 442, 571
Kzo9I GATC 3 cut(s) 54, 400, 657
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 284, 374, 411, 474, 537, 629, 658
Lsp1109I GCAGC 2 cut(s) 55, 116
LweI GCATC 1 cut(s) 485
MaeI CTAG 1 cut(s) 227
MaeII ACGT 2 cut(s) 135, 334
MaeIII GTNAC 3 cut(s) 94, 557, 636
MalI GATC 3 cut(s) 56, 402, 659
MboI GATC 3 cut(s) 54, 400, 657
MboII GAAGA 2 cut(s) 520, 659
MflI RGATCY 2 cut(s) 54, 657
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 4 cut(s) 252, 260, 339, 590
MlyI GAGTC 2 cut(s) 403, 565
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 5 cut(s) 188, 427, 627, 643, 672
MseI TTAA 2 cut(s) 50, 597
MslI CAYNNNNRTG 1 cut(s) 618
MspA1I CMGCKG 1 cut(s) 631
NdeII GATC 3 cut(s) 54, 400, 657
NlaIII CATG 4 cut(s) 187, 291, 442, 571
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 557
NspI RCATGY 1 cut(s) 291
OliI CACNNNNGTG 1 cut(s) 618
PagI TCATGA 1 cut(s) 438
PceI AGGCCT 1 cut(s) 430
PciI ACATGT 1 cut(s) 287
PfeI GAWTC 3 cut(s) 38, 44, 113
PkrI GCNGC 3 cut(s) 14, 70, 131
PleI GAGTC 2 cut(s) 402, 564
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
PpsI GAGTC 2 cut(s) 402, 564
Ppu21I YACGTR 1 cut(s) 335
PscI ACATGT 1 cut(s) 287
PspCI CACGTG 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 54, 657
RsaI GTAC 2 cut(s) 671, 700
RsaNI GTAC 2 cut(s) 670, 699
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 2 cut(s) 50, 597
SatI GCNGC 3 cut(s) 13, 69, 130
Sau3AI GATC 3 cut(s) 54, 400, 657
SchI GAGTC 2 cut(s) 403, 565
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 2 cut(s) 368, 661
SmoI CTYRAG 2 cut(s) 368, 661
Sse9I AATT 4 cut(s) 252, 260, 339, 590
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 3 cut(s) 12, 104, 631
SspMI CTAG 1 cut(s) 227
StuI AGGCCT 1 cut(s) 430
StyI CCWWGG 2 cut(s) 108, 431
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 2 cut(s) 138, 337
TasI AATT 4 cut(s) 252, 260, 339, 590
TatI WGTACW 2 cut(s) 669, 698
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 3 cut(s) 38, 44, 113
Tru1I TTAA 2 cut(s) 50, 597
Tru9I TTAA 2 cut(s) 50, 597
TscAI CASTG 2 cut(s) 613, 623
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 68, 129
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 2 cut(s) 36, 78
TspRI CASTG 2 cut(s) 613, 623
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.