RchiOBHm_Chr2g0155771

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000405
Physical Location & Seq
Forward (+)
72626307 .. 72635893
9587 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52464

Sequence Viewer

Length: 489 bp
ATGGTGGAAAATCTTGAGAAGGGGATATCACCATTTACAATTATGGAATTTATCCATCAGCAAGTTTCAATATCATGTCAAGTACTTGTATCTCCAAGTTTGTCGTCGGAGGCATATGCAAGAGGAACCATCACTGTGAACAGCAAAAAGAATCTGGACAAGTTGTCTGGGTTTTTGGAGAATCCAGATCACAGCATCATTTCTTCAAAGGGAAGGCCTTGGGTAATTACTGAGAAACGGCTAGCACATGATATTTCATTGGCTTCAATTCAAGCCTTCATTGCTAACTATCAGACTATGTTAAGGAGTAGAAAAATTGAAACGAGCAATGAATTGAAGGTTGTCCTCTCTGGAACTGAAGAATTCAACACAGCCATGCTGCTGAAGAATTTATTTTGGGAATTTGTTAATCATCAAGCTCGACTTCACCAGAGGTTACTTACTGAAGAGGCAAAGATCTCTCAACTATTTGATGCAGAAGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

162

Amino Acids

18.42

Weight (kDa)

6.21

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 47, 362, 388, 401
AcuI CTGAAG 3 cut(s) 378, 404, 465
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 7 cut(s) 69, 207, 267, 272, 320, 337, 367
AhdI GACNNNNNGTC 1 cut(s) 163
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 4 cut(s) 47, 362, 388, 401
AsuHPI GGTGA 2 cut(s) 21, 419
AsuNHI GCTAGC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 366
BccI CCATC 2 cut(s) 63, 137
BceAI ACGGC 1 cut(s) 254
BfaI CTAG 1 cut(s) 242
BglII AGATCT 1 cut(s) 456
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
BmcAI AGTACT 1 cut(s) 84
BmeRI GACNNNNNGTC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 2 cut(s) 204, 463
BmtI GCTAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 279, 334
BseDI CCNNGG 1 cut(s) 218
BseMI GCAATG 2 cut(s) 279, 334
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 366
BshFI GGCC 1 cut(s) 217
BsnI GGCC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 187, 456
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 127
BspOI GCTAGC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 279, 334
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 187, 456
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 441, 474
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 2 cut(s) 190, 459
BstMBI GATC 2 cut(s) 187, 456
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 83
CviAII CATG 3 cut(s) 75, 248, 376
CviJI RGCY 6 cut(s) 217, 241, 263, 275, 374, 419
CviKI_1 RGCY 6 cut(s) 217, 241, 263, 275, 374, 419
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 189, 458
DpnII GATC 2 cut(s) 187, 456
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 441, 474
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 2 cut(s) 441, 474
Eco130I CCWWGG 1 cut(s) 218
Eco147I AGGCCT 1 cut(s) 217
Eco32I GATATC 1 cut(s) 27
Eco57I CTGAAG 3 cut(s) 378, 404, 465
EcoRI GAATTC 1 cut(s) 362
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 78, 251, 379
FaiI YATR 7 cut(s) 44, 76, 115, 117, 249, 299, 377
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 3 cut(s) 74, 247, 375
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 217
Hin1II CATG 3 cut(s) 78, 251, 379
HinfI GANTC 2 cut(s) 151, 181
HphI GGTGA 2 cut(s) 21, 419
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 109, 294
Hpy188III TCNNGA 4 cut(s) 14, 155, 185, 351
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 13, 207, 286, 331
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 119, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 3 cut(s) 78, 251, 379
Kzo9I GATC 2 cut(s) 187, 456
LpnPI CCDG 5 cut(s) 140, 153, 198, 336, 443
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 2 cut(s) 204, 463
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 435
MalI GATC 2 cut(s) 189, 458
MboI GATC 2 cut(s) 187, 456
MboII GAAGA 4 cut(s) 195, 371, 397, 458
MflI RGATCY 1 cut(s) 456
MluCI AATT 9 cut(s) 39, 47, 225, 267, 315, 332, 362, 388, 401
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 5 cut(s) 103, 116, 356, 426, 442
MseI TTAA 2 cut(s) 302, 408
MslI CAYNNNNRTG 2 cut(s) 134, 374
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 187, 456
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 78, 251, 379
NlaIV GGNNCC 1 cut(s) 127
PceI AGGCCT 1 cut(s) 217
PfeI GAWTC 2 cut(s) 151, 181
PkrI GCNGC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 2 cut(s) 134, 374
SaqAI TTAA 2 cut(s) 302, 408
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 187, 456
ScaI AGTACT 1 cut(s) 84
SetI ASST 3 cut(s) 342, 421, 437
SfaNI GCATC 2 cut(s) 204, 463
SmiMI CAYNNNNRTG 2 cut(s) 134, 374
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 9 cut(s) 39, 47, 225, 267, 315, 332, 362, 388, 401
SseBI AGGCCT 1 cut(s) 217
SspMI CTAG 1 cut(s) 242
StuI AGGCCT 1 cut(s) 217
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 421
TasI AATT 9 cut(s) 39, 47, 225, 267, 315, 332, 362, 388, 401
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 2 cut(s) 151, 181
Tru1I TTAA 2 cut(s) 302, 408
Tru9I TTAA 2 cut(s) 302, 408
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 246, 268, 345
TspRI CASTG 1 cut(s) 139
XapI RAATTY 4 cut(s) 47, 362, 388, 401
XspI CTAG 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.