Rh2CG500900

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000405
Physical Location & Seq
Forward (+)
67285723 .. 67288214
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG500900.1

Sequence Viewer

Length: 747 bp
ATGATCATCGATCGTGGGTCATATTTGAAAGAGAACCTAACAGTATTTTGGGTGTGTTTGATCTTTGAAATTTTCCATCCTATTTGTAGTCTTTCAAATGTTTCTGCACGTTTCCTTAAAGATTTCCCTAATTGTATTGAATTCTTAATGGTGTACTATAATTTGTTGTTTTATGCACAGATGAGTGATAGAACTTATGAAAGTTCTTCTGAAATGGATCGACACGACGTGGATATTGGAGGGGTTCCCTATGTAGTAATGGTGGAAAATCTTGAGAAGGGGATATCACCATTTACAATTATGGAATTTATCCATCAGCAAGTTTCAATATCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGTCGGAGGCATATACAAGAGGAACCATCACTGTGAACAGCAAAAAGAATCTGGACAAGTTGTCTGGGTTTTTGGAGAATCCAGATCACAGCATCATTTCTTCAAAGGGAAGGCCTTGGGTAATTACTGAGAAACGGCTAGCACATGATATTTCATTGGCTTCAATTCAAGCCTTCATTGCTAACTATCAGACTATGTTAAGGAGTAGAAAAATTGAAACGAGCAATGAATTGAAGGTTGTCCTCTCTGGAACTGAAGAATTCAACACAGCTATGCTGCTGAAGAATTTGTTTTGGGAATTTGTTAATCATCAAGCTCGACTTCACCGGAGGTTACTTACTGAAGAGGCAAAGATCTCTCAGCTATTTGATGCAGAAGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

248

Amino Acids

28.58

Weight (kDa)

5.67

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 6 cut(s) 69, 140, 305, 620, 646, 659
AcuI CTGAAG 3 cut(s) 636, 662, 723
AdeI CACNNNGTG 1 cut(s) 229
AfaI GTAC 2 cut(s) 155, 342
AhdI GACNNNNNGTC 1 cut(s) 421
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 3 cut(s) 632, 677, 724
AluI AGCT 3 cut(s) 632, 677, 724
AlwI GGATC 1 cut(s) 225
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 637
ApoI RAATTY 6 cut(s) 69, 140, 305, 620, 646, 659
AsuHPI GGTGA 2 cut(s) 279, 677
AsuNHI GCTAGC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 624
BccI CCATC 3 cut(s) 84, 321, 395
BceAI ACGGC 1 cut(s) 512
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 500
BglII AGATCT 1 cut(s) 714
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
BmcAI AGTACT 1 cut(s) 342
BmeRI GACNNNNNGTC 1 cut(s) 421
BmgBI CACGTC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 246, 385
BmsI GCATC 2 cut(s) 462, 721
BmtI GCTAGC 1 cut(s) 503
BpuEI CTTGAG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 476
BsaWI WCCGGW 1 cut(s) 687
Bse3DI GCAATG 2 cut(s) 537, 592
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 537, 592
BseMII CTCAG 2 cut(s) 480, 734
BseXI GCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 688
BsnI GGCC 1 cut(s) 475
Bsp143I GATC 6 cut(s) 3, 10, 60, 217, 445, 714
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 2 cut(s) 481, 733
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 246, 385
BspOI GCTAGC 1 cut(s) 503
BspPI GGATC 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 537, 592
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 6 cut(s) 3, 10, 60, 217, 445, 714
BssT1I CCWWGG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 43, 394
Bst6I CTCTTC 2 cut(s) 699, 732
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 2 cut(s) 489, 720
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 6 cut(s) 6, 13, 63, 220, 448, 717
BstMBI GATC 6 cut(s) 3, 10, 60, 217, 445, 714
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 1 cut(s) 475
BsuTUI ATCGAT 1 cut(s) 9
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 154, 341
CviAII CATG 2 cut(s) 333, 506
CviJI RGCY 7 cut(s) 475, 499, 521, 533, 632, 677, 724
CviKI_1 RGCY 7 cut(s) 475, 499, 521, 533, 632, 677, 724
CviQI GTAC 2 cut(s) 154, 341
DdeI CTNAG 2 cut(s) 489, 720
DpnI GATC 6 cut(s) 5, 12, 62, 219, 447, 716
DpnII GATC 6 cut(s) 3, 10, 60, 217, 445, 714
DraIII CACNNNGTG 1 cut(s) 229
DriI GACNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 699, 732
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 2 cut(s) 699, 732
Eco130I CCWWGG 1 cut(s) 476
Eco147I AGGCCT 1 cut(s) 475
Eco32I GATATC 1 cut(s) 285
Eco57I CTGAAG 3 cut(s) 636, 662, 723
EcoRI GAATTC 2 cut(s) 140, 620
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 476
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 2 cut(s) 336, 509
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FatI CATG 2 cut(s) 332, 505
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 638
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 638
FspBI CTAG 1 cut(s) 500
GluI GCNGC 1 cut(s) 638
HaeIII GGCC 1 cut(s) 475
HapII CCGG 1 cut(s) 688
Hin1II CATG 2 cut(s) 336, 509
HinfI GANTC 2 cut(s) 409, 439
HpaII CCGG 1 cut(s) 688
HphI GGTGA 2 cut(s) 279, 677
Hpy166II GTNNAC 2 cut(s) 154, 397
Hpy188I TCNGA 3 cut(s) 211, 367, 552
Hpy188III TCNNGA 4 cut(s) 272, 413, 443, 609
Hpy8I GTNNAC 2 cut(s) 154, 397
Hpy99I CGWCG 2 cut(s) 230, 367
HpyAV CCTTC 4 cut(s) 271, 465, 544, 589
HpyCH4III ACNGT 2 cut(s) 43, 394
HpyCH4IV ACGT 2 cut(s) 109, 228
HpyCH4V TGCA 3 cut(s) 107, 176, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 489, 720
HpySE526I ACGT 2 cut(s) 109, 228
Hsp92II CATG 2 cut(s) 336, 509
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 10, 60, 217, 445, 714
LpnPI CCDG 5 cut(s) 398, 411, 456, 594, 701
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 2 cut(s) 462, 721
MaeI CTAG 1 cut(s) 500
MaeII ACGT 2 cut(s) 109, 228
MaeIII GTNAC 1 cut(s) 693
MalI GATC 6 cut(s) 5, 12, 62, 219, 447, 716
MboI GATC 6 cut(s) 3, 10, 60, 217, 445, 714
MboII GAAGA 5 cut(s) 198, 453, 629, 655, 716
MflI RGATCY 1 cut(s) 714
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 6 cut(s) 233, 361, 374, 614, 684, 700
MseI TTAA 4 cut(s) 117, 146, 560, 666
MslI CAYNNNNRTG 2 cut(s) 392, 632
MspI CCGG 1 cut(s) 688
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 6 cut(s) 3, 10, 60, 217, 445, 714
NheI GCTAGC 1 cut(s) 499
NlaIII CATG 2 cut(s) 336, 509
NlaIV GGNNCC 2 cut(s) 246, 385
PceI AGGCCT 1 cut(s) 475
PfeI GAWTC 2 cut(s) 409, 439
PkrI GCNGC 1 cut(s) 639
Ple19I CGATCG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 246, 385
PsuI RGATCY 1 cut(s) 714
PvuI CGATCG 1 cut(s) 13
RsaI GTAC 2 cut(s) 155, 342
RsaNI GTAC 2 cut(s) 154, 341
RseI CAYNNNNRTG 2 cut(s) 392, 632
SaqAI TTAA 4 cut(s) 117, 146, 560, 666
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 6 cut(s) 3, 10, 60, 217, 445, 714
ScaI AGTACT 1 cut(s) 342
SetI ASST 8 cut(s) 39, 112, 231, 600, 634, 679, 695, 726
SfaNI GCATC 2 cut(s) 462, 721
SmiMI CAYNNNNRTG 2 cut(s) 392, 632
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SseBI AGGCCT 1 cut(s) 475
SspMI CTAG 1 cut(s) 500
StuI AGGCCT 1 cut(s) 475
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 2 cut(s) 43, 394
TaiI ACGT 2 cut(s) 112, 231
TaqI TCGA 3 cut(s) 9, 220, 679
TatI WGTACW 2 cut(s) 153, 340
TfiI GAWTC 2 cut(s) 409, 439
Tru1I TTAA 4 cut(s) 117, 146, 560, 666
Tru9I TTAA 4 cut(s) 117, 146, 560, 666
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 637
TspDTI ATGAA 4 cut(s) 213, 504, 526, 603
TspRI CASTG 1 cut(s) 397
XapI RAATTY 6 cut(s) 69, 140, 305, 620, 646, 659
XspI CTAG 1 cut(s) 500
ZrmI AGTACT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.