Rh2AG363400

Isoflavone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000405
Physical Location & Seq
Reverse (-)
53835005 .. 53835310
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG363400.1

Sequence Viewer

Length: 306 bp
ATGGAAATGGAGTTCAGGTCTGGAGTGGACGACGCGTGGTATGCCGTCAAAATTTTGACGGAAGGCAATAGTGCGGAACAGCTAAGAGTGAAGTTTTGCAACTTCGAAGACGAGTACGACGAGGTGTGCGAGGCCAAGGACCTAACTTCAGCTAACCACGTGACGAACTTCCGGTCGAGGTTCAGGCCTGTGTCTGCTCAGGTGCAGGACTCTGAATGCTTGAACGTGGTAGACGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGGCGATTGCCGCTTCTATGATGCTGTTGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

101

Amino Acids

11.35

Weight (kDa)

4.36

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 100 8.7e-20 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 74, 252, 280
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 160
AfaI GTAC 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 223
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 82, 152
AluI AGCT 2 cut(s) 82, 152
AoxI GGCC 2 cut(s) 132, 185
ApoI RAATTY 1 cut(s) 51
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 105
AvaII GGWCC 1 cut(s) 139
BauI CACGAG 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 114
BceAI ACGGC 3 cut(s) 29, 239, 250
BcnI CCSGG 1 cut(s) 270
BfaI CTAG 1 cut(s) 304
BisI GCNGC 2 cut(s) 252, 280
BlsI GCNGC 2 cut(s) 253, 281
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 2 cut(s) 134, 187
BsiEI CGRYCG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 172, 270
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 134, 187
Bsp119I TTCGAA 1 cut(s) 105
BspACI CCGC 3 cut(s) 74, 252, 280
BspANI GGCC 2 cut(s) 134, 187
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 135
BssSI CACGAG 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 83, 198
BstFNI CGCG 1 cut(s) 35
BstMCI CGRYCG 1 cut(s) 176
BstMWI GCNNNNNNNGC 2 cut(s) 41, 279
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 268
BstUI CGCG 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 134, 187
Cac8I GCNNGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 238
CviJI RGCY 4 cut(s) 82, 134, 152, 187
CviKI_1 RGCY 4 cut(s) 82, 134, 152, 187
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 83, 198
Eco130I CCWWGG 1 cut(s) 135
Eco147I AGGCCT 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 42, 239, 288
FatI CATG 1 cut(s) 237
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 252, 280
Fsp4HI GCNGC 2 cut(s) 252, 280
FspBI CTAG 1 cut(s) 304
GluI GCNGC 2 cut(s) 252, 280
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 134, 187
HapII CCGG 2 cut(s) 172, 270
HgaI GACGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 172, 270
Hpy166II GTNNAC 3 cut(s) 28, 232, 301
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 3 cut(s) 28, 232, 301
Hpy99I CGWCG 2 cut(s) 35, 122
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 2 cut(s) 159, 225
HpyCH4V TGCA 2 cut(s) 99, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 279
HpyF3I CTNAG 2 cut(s) 83, 198
HpySE526I ACGT 2 cut(s) 159, 225
Hsp92II CATG 1 cut(s) 241
LpnPI CCDG 7 cut(s) 6, 169, 185, 185, 191, 201, 283
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 304
MaeII ACGT 2 cut(s) 159, 225
MaeIII GTNAC 2 cut(s) 160, 262
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 51
MluI ACGCGT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 115, 124, 171
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 2 cut(s) 172, 270
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 221
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 41, 279
NciI CCSGG 1 cut(s) 270
NlaIII CATG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 241
NspV TTCGAA 1 cut(s) 105
PaeI GCATGC 1 cut(s) 241
PceI AGGCCT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 126, 240
PctI GAATGC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 253, 281
PleI GAGTC 1 cut(s) 203
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
PpsI GAGTC 1 cut(s) 203
Ppu21I YACGTR 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspCI CACGTG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 242
SatI GCNGC 2 cut(s) 252, 280
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 270
SetI ASST 9 cut(s) 20, 84, 126, 144, 154, 162, 182, 204, 228
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 242
SphI GCATGC 1 cut(s) 241
Sse9I AATT 1 cut(s) 51
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 3 cut(s) 74, 252, 280
SspMI CTAG 1 cut(s) 304
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 2 cut(s) 162, 228
TaqI TCGA 2 cut(s) 105, 176
TasI AATT 1 cut(s) 51
TauI GCSGC 2 cut(s) 254, 282
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.