Rorug07G0139100

Isoflavone reductase homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
10970993 .. 10971394
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0139100.1

Sequence Viewer

Length: 402 bp
ATGCCTATTGTGGTTGCTTTTGGGGATGCGACCTTTGTGGACAACGGTGGACTTTTTCCTGCAACTAAACCAACTGTTCGGGATTTGGAGAAAGTGAGACTTGATAGTTTGGATGAAGCTACTATTAAACGGACGCCTTCGTGTGTCAATTGCTTGAAGGGCCTTGATCACCAACGGGCAACAGATGATTACTCGATTTCCTTGCTCACACATTTATCATGGAGATTGCTTTGTCAGTTGGCTGGAGCCGAGTCACTTCTGTCCAGTGTGCCGATATTCAATGTCAATTGTCCTACAGTGCCAACCTTTAATATCAGAAGGCCAGTGTGCAAGACCTTCAATATTCGAGGGCTTAGGCTCAGGCCAAGGTGCAAACCCTTAAAGGCTTCAATATATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.8

Weight (kDa)

9.38

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 134
AgsI TTSAA 4 cut(s) 157, 280, 340, 390
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 91
AoxI GGCC 3 cut(s) 160, 320, 362
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 161
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 353, 359
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 264, 323
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 2 cut(s) 31, 118
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 2 cut(s) 264, 323
BshFI GGCC 3 cut(s) 162, 322, 364
BsmAI GTCTC 1 cut(s) 91
BsnI GGCC 3 cut(s) 162, 322, 364
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 3 cut(s) 162, 322, 364
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 264, 323
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 47, 76, 298
BstACI GRCGYC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 353, 359
BstF5I GGATG 2 cut(s) 31, 118
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 294
BsuRI GGCC 3 cut(s) 162, 322, 364
BtsCI GGATG 2 cut(s) 31, 118
BtsIMutI CAGTG 3 cut(s) 271, 303, 330
Cfr13I GGNCC 1 cut(s) 160
CseI GACGC 1 cut(s) 142
CviAII CATG 1 cut(s) 219
CviJI RGCY 9 cut(s) 119, 162, 242, 248, 322, 352, 358, 364, 386
CviKI_1 RGCY 9 cut(s) 119, 162, 242, 248, 322, 352, 358, 364, 386
DdeI CTNAG 2 cut(s) 353, 359
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 1 cut(s) 222
FaiI YATR 3 cut(s) 220, 394, 396
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 1 cut(s) 218
FbaI TGATCA 1 cut(s) 166
FokI GGATG 2 cut(s) 38, 125
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 3 cut(s) 162, 322, 364
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 222
HinfI GANTC 1 cut(s) 251
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 40, 50
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 40, 50
HpyAV CCTTC 4 cut(s) 147, 151, 312, 346
HpyCH4III ACNGT 3 cut(s) 47, 76, 298
HpyCH4V TGCA 3 cut(s) 62, 330, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 353, 359
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 72, 228, 277, 336, 346
LweI GCATC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 252
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MfeI CAATTG 2 cut(s) 148, 286
MluCI AATT 3 cut(s) 148, 286, 397
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 1 cut(s) 341
MseI TTAA 4 cut(s) 126, 309, 380, 400
MunI CAATTG 2 cut(s) 148, 286
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 1 cut(s) 166
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 252
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 160
SaqAI TTAA 4 cut(s) 126, 309, 380, 400
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 260
SetI ASST 5 cut(s) 35, 121, 308, 338, 371
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 294
Sse9I AATT 3 cut(s) 148, 286, 397
SspI AATATT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 3 cut(s) 47, 76, 298
TaqI TCGA 2 cut(s) 194, 346
TasI AATT 3 cut(s) 148, 286, 397
Tru1I TTAA 4 cut(s) 126, 309, 380, 400
Tru9I TTAA 4 cut(s) 126, 309, 380, 400
TscAI CASTG 3 cut(s) 271, 303, 330
TseFI GTSAC 1 cut(s) 252
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 3 cut(s) 271, 303, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.