FvH4_2g12920

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000405
Physical Location & Seq
Reverse (-)
11343343 .. 11345662
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12920.t4

Sequence Viewer

Length: 555 bp
ATGGGCACTGCTTCTTTTGAAAGGGATCGACACGATGTCGATATTGGAGGTGTTCCCTATGTGGTAATGGTGGAGAACCTTGAGAAGGGGATATCACCGTTTACAATTATGGAATTTATCCATCAGCAAGTTTCAATCTCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGCGTGAGGCATATTCAAGAGCAACCATCACTGTGAGCAGCAAAAGGAATCTGGACAAGTTGTCTGAGTTTTTGGAGAATCCAAATCACAGCATCATTTCCTCAGGCGGAAGGCCTTGGGTACTTACTGAGAAATGGCCAGCACATGATATTCCATTGGCTTCAATTCAAGCCCTCATGGCTCACTATCAGACTATGTTACAGAGTAGAGAAACTGAAACTAGCAATGAATTGAAGGTTGTCCTCTCTGGAACTGAAGAATACAACACAGCTATGCTGCTGAAGGATTTATTCTGGGAATTTATTAATCATCAAGCTCGACTTCACCAGAGGTTACGCGCTGAAGAGGCAAAGATCGCTCAGCTATTTGATGCAGAAGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

185

Amino Acids

20.95

Weight (kDa)

5.35

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 172, 507
AciI CCGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 2 cut(s) 113, 467
AcuI CTGAAG 3 cut(s) 444, 470, 531
AfaI GTAC 2 cut(s) 150, 291
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 6 cut(s) 20, 135, 186, 333, 338, 403
AhdI GACNNNNNGTC 2 cut(s) 35, 229
AluBI AGCT 3 cut(s) 440, 485, 532
AluI AGCT 3 cut(s) 440, 485, 532
AlwI GGATC 1 cut(s) 33
AoxI GGCC 2 cut(s) 281, 305
ApeKI GCWGC 2 cut(s) 207, 445
ApoI RAATTY 2 cut(s) 113, 467
AseI ATTAAT 1 cut(s) 474
AspLEI GCGC 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 87, 485
AxyI CCTNAGG 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 307
BbvI GCAGC 2 cut(s) 219, 432
BccI CCATC 2 cut(s) 129, 203
BfaI CTAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 2 cut(s) 208, 446
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 2 cut(s) 209, 447
BmcAI AGTACT 1 cut(s) 150
BmeRI GACNNNNNGTC 2 cut(s) 35, 229
BmsI GCATC 2 cut(s) 270, 529
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 4 cut(s) 225, 285, 288, 542
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 219, 432
Bsh1236I CGCG 2 cut(s) 172, 507
BshFI GGCC 2 cut(s) 283, 307
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 2 cut(s) 283, 307
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 25, 522
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 1 cut(s) 276
BspANI GGCC 2 cut(s) 283, 307
BspCNI CTCAG 4 cut(s) 226, 284, 289, 541
BspFNI CGCG 2 cut(s) 172, 507
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 2 cut(s) 25, 522
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 99, 202
Bst6I CTCTTC 2 cut(s) 507, 540
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 4 cut(s) 234, 271, 297, 528
BstENI CCTNNNNNAGG 1 cut(s) 83
BstFNI CGCG 2 cut(s) 172, 507
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 2 cut(s) 28, 525
BstMBI GATC 2 cut(s) 25, 522
BstMWI GCNNNNNNNGC 3 cut(s) 347, 515, 524
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 2 cut(s) 172, 507
BstV1I GCAGC 2 cut(s) 219, 432
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 283, 307
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 198
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 1 cut(s) 509
Csp6I GTAC 2 cut(s) 149, 290
CviAII CATG 3 cut(s) 141, 314, 346
CviJI RGCY 8 cut(s) 283, 307, 329, 341, 350, 440, 485, 532
CviKI_1 RGCY 8 cut(s) 283, 307, 329, 341, 350, 440, 485, 532
CviQI GTAC 2 cut(s) 149, 290
DdeI CTNAG 4 cut(s) 234, 271, 297, 528
DpnI GATC 2 cut(s) 27, 524
DpnII GATC 2 cut(s) 25, 522
DriI GACNNNNNGTC 2 cut(s) 35, 229
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 507, 540
Eam1105I GACNNNNNGTC 2 cut(s) 35, 229
EarI CTCTTC 2 cut(s) 507, 540
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 283
Eco32I GATATC 1 cut(s) 93
Eco57I CTGAAG 3 cut(s) 444, 470, 531
Eco81I CCTNAGG 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 144, 317, 349
FaiI YATR 8 cut(s) 60, 110, 142, 181, 315, 347, 365, 443
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FatI CATG 3 cut(s) 140, 313, 345
Fnu4HI GCNGC 2 cut(s) 208, 446
Fsp4HI GCNGC 2 cut(s) 208, 446
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 508
GluI GCNGC 2 cut(s) 208, 446
HaeIII GGCC 2 cut(s) 283, 307
HhaI GCGC 1 cut(s) 509
Hin1II CATG 3 cut(s) 144, 317, 349
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 2 cut(s) 217, 247
HphI GGTGA 2 cut(s) 87, 485
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 235, 360
Hpy188III TCNNGA 3 cut(s) 186, 221, 417
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 4 cut(s) 79, 273, 397, 445
HpyCH4III ACNGT 2 cut(s) 99, 202
HpyCH4V TGCA 1 cut(s) 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 515, 524
HpyF3I CTNAG 4 cut(s) 234, 271, 297, 528
Hsp92II CATG 3 cut(s) 144, 317, 349
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 2 cut(s) 25, 522
LpnPI CCDG 6 cut(s) 206, 258, 321, 402, 448, 509
Lsp1109I GCAGC 2 cut(s) 219, 432
LweI GCATC 2 cut(s) 270, 529
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 366, 501
MalI GATC 2 cut(s) 27, 524
MboI GATC 2 cut(s) 25, 522
MboII GAAGA 2 cut(s) 437, 524
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 5 cut(s) 105, 113, 333, 398, 467
MluNI TGGCCA 1 cut(s) 307
MnlI CCTC 7 cut(s) 41, 169, 280, 353, 422, 492, 508
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 2 cut(s) 200, 440
Msp20I TGGCCA 1 cut(s) 307
MvnI CGCG 2 cut(s) 172, 507
MwoI GCNNNNNNNGC 3 cut(s) 347, 515, 524
NdeII GATC 2 cut(s) 25, 522
NlaIII CATG 3 cut(s) 144, 317, 349
PceI AGGCCT 1 cut(s) 283
PfeI GAWTC 2 cut(s) 217, 247
PkrI GCNGC 2 cut(s) 209, 447
PshBI ATTAAT 1 cut(s) 474
RsaI GTAC 2 cut(s) 150, 291
RsaNI GTAC 2 cut(s) 149, 290
RseI CAYNNNNRTG 2 cut(s) 200, 440
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 208, 446
Sau3AI GATC 2 cut(s) 25, 522
ScaI AGTACT 1 cut(s) 150
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 52, 81, 408, 442, 487, 503, 534
SfaNI GCATC 2 cut(s) 270, 529
SmiMI CAYNNNNRTG 2 cut(s) 200, 440
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 5 cut(s) 105, 113, 333, 398, 467
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 276
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 283
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 99, 202
TaqI TCGA 3 cut(s) 28, 39, 487
TasI AATT 5 cut(s) 105, 113, 333, 398, 467
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 2 cut(s) 217, 247
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 2 cut(s) 13, 205
TseI GCWGC 2 cut(s) 207, 445
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 2 cut(s) 13, 205
VspI ATTAAT 1 cut(s) 474
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 113, 467
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.