Rorug04G0061300

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000405
Physical Location & Seq
Forward (+)
9607125 .. 9607660
536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0061300.1

Sequence Viewer

Length: 447 bp
ATGAGGTTTGAGATACATGGCAGAGGTGTTGCTTGTAGTTCAGGTGTTATTTCTCAACATGCTGTGCAATTGGACAACATGGCATGTACATGTAAAAGATGGGATTTGAGTGGACTTCCTTGTGGACATGCTATTGCAGCAATTTACTCCAAGGGATGGTCCACTAATGACTTTGTTGATGAGCACTATACACAAAAGAAGTATTTGATGGCTTATGAACCAATGATCAACCCTATAGCTGGGGTCGATGAGTGGGAGCTGATTAACAGGCCAATTGCACCTCCAAGGTTTAGAAGACTAATCGGAAGGCCGAAAATGTCAAGAAACAAACAACCAGGTGAGGAGCCACCGCAACCTGAAACCACAAAGCTGCCTAAATCTTATTATTCACAGATTAAATGTGAAAGGTGTGGTTTGAAAGGTCATAATCAAAAGGACATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

148

Amino Acids

16.85

Weight (kDa)

8.99

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 22 - 51 4.3e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 156
AciI CCGC 1 cut(s) 350
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 156, 239
AflIII ACRYGT 2 cut(s) 89, 438
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 239, 259, 370
AluI AGCT 3 cut(s) 239, 259, 370
Alw21I GWGCWC 1 cut(s) 186
AoxI GGCC 2 cut(s) 269, 308
ApeKI GCWGC 2 cut(s) 137, 370
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 186
BbvI GCAGC 2 cut(s) 149, 357
BccI CCATC 3 cut(s) 93, 150, 202
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 2 cut(s) 138, 371
BlsI GCNGC 2 cut(s) 139, 372
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 150, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 239
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 150, 284
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 156, 239
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 149, 357
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 2 cut(s) 271, 310
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 2 cut(s) 156, 239
BsnI GGCC 2 cut(s) 271, 310
Bsp1286I GDGCHC 1 cut(s) 186
Bsp1407I TGTACA 1 cut(s) 86
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 350
BspANI GGCC 2 cut(s) 271, 310
BspLI GGNNCC 1 cut(s) 345
BsrGI TGTACA 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 150, 284
BssMI GATC 1 cut(s) 225
BssT1I CCWWGG 2 cut(s) 150, 284
Bst2UI CCWGG 1 cut(s) 336
BstAUI TGTACA 1 cut(s) 86
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 5 cut(s) 62, 87, 93, 131, 442
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 149, 357
BstV2I GAAGAC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 271, 310
BtsCI GGATG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 159
CsiI ACCWGGT 1 cut(s) 334
Csp6I GTAC 1 cut(s) 87
CviAII CATG 7 cut(s) 17, 59, 79, 84, 90, 128, 439
CviJI RGCY 7 cut(s) 212, 239, 259, 271, 310, 346, 370
CviKI_1 RGCY 7 cut(s) 212, 239, 259, 271, 310, 346, 370
CviQI GTAC 1 cut(s) 87
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 150, 284
Eco47I GGWCC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 150, 284
ErhI CCWWGG 2 cut(s) 150, 284
FaeI CATG 7 cut(s) 20, 62, 82, 87, 93, 131, 442
FatI CATG 7 cut(s) 16, 58, 78, 83, 89, 127, 438
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 138, 371
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 138, 371
GluI GCNGC 2 cut(s) 138, 371
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 2 cut(s) 271, 310
Hin1II CATG 7 cut(s) 20, 62, 82, 87, 93, 131, 442
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 113, 125, 162
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 3 cut(s) 113, 125, 162
HpyAV CCTTC 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 67, 137, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 7 cut(s) 20, 62, 82, 87, 93, 131, 442
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 256, 343
LpnPI CCDG 6 cut(s) 27, 225, 253, 321, 348, 369
Lsp1109I GCAGC 2 cut(s) 149, 357
MabI ACCWGGT 1 cut(s) 334
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 306
MfeI CAATTG 2 cut(s) 68, 273
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 3 cut(s) 68, 141, 273
MnlI CCTC 3 cut(s) 17, 291, 334
MseI TTAA 2 cut(s) 264, 396
MslI CAYNNNNRTG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 2 cut(s) 68, 273
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 1 cut(s) 225
NlaIII CATG 7 cut(s) 20, 62, 82, 87, 93, 131, 442
NlaIV GGNNCC 1 cut(s) 345
NspI RCATGY 5 cut(s) 62, 87, 93, 131, 442
PciI ACATGT 2 cut(s) 89, 438
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 2 cut(s) 139, 372
PscI ACATGT 2 cut(s) 89, 438
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 159
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 2 cut(s) 264, 396
SatI GCNGC 2 cut(s) 138, 371
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 186
SexAI ACCWGGT 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 88
Sse9I AATT 3 cut(s) 68, 141, 273
SsiI CCGC 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 2 cut(s) 150, 284
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 68, 141, 273
TatI WGTACW 1 cut(s) 86
Tru1I TTAA 2 cut(s) 264, 396
Tru9I TTAA 2 cut(s) 264, 396
TseI GCWGC 2 cut(s) 137, 370
TspDTI ATGAA 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 5 cut(s) 62, 87, 93, 131, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.