Rroxscaffold_2G00111280

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000405
Physical Location & Seq
Forward (+)
35847844 .. 35848705
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111280.1

Sequence Viewer

Length: 582 bp
ATGACCATGGAAATGGAGTTTAGGTCTGGAGTGGACGACGCATGGTATGCCGTCAAAATTTTGACAGAAGGCAATAGTGCGGAACGGCTAAGAGTGAAGTTTTGCGACTTCGAAGACAAGTACGACGAGGTGCAGGACTCGGAATGCCCGAACGTGGTGGAGGGCATGCTCGTGTGTGCCGCCGTTTCTGTTACACCCGACGATTGCCGCTTCTATGATGCCGTTGTGAACCAGGTGAAACATAAGAAGCATCGAAGTGTGGAAGGAGAAGAAGAATGCTTATGCAAGTTCGTTCTATTCTGGAAACATGGGCCAAAGGGTGGAAGCCTTACGACTCAAGCTGTCGGAGATATCTGTAGAGTCCAGCCTCGGACGGAAGAAGTAGATCCACTTCTGGCATTGTTTCTACAAACGGCAAGGAGTAGGATCCAAACCAATGAGTCGAGCCTTGTTCCTCTTGCTACTTCTTCTACAATACCTCATGAGGCCTCTTCAAAAGGAATGAGGGAAACTCCATTTGAAAGAGACCAGGATGTGGAAGAGATTTCTAACAGTGACGGACGCAGAAACTTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

193

Amino Acids

21.86

Weight (kDa)

4.88

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 119 3.1e-23 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 320, 535
AciI CCGC 3 cut(s) 80, 180, 208
AclWI GGATC 3 cut(s) 380, 421, 434
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 3 cut(s) 154, 320, 535
AgsI TTSAA 2 cut(s) 495, 521
AjnI CCWGG 2 cut(s) 231, 528
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 380, 421, 434
AoxI GGCC 2 cut(s) 311, 486
ApoI RAATTY 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 111
BamHI GGATCC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BauI CACGAG 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 120
BceAI ACGGC 5 cut(s) 35, 101, 167, 206, 429
BciT130I CCWGG 2 cut(s) 233, 530
BcoDI GTCTC 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 355
BisI GCNGC 2 cut(s) 180, 208
BlsI GCNGC 2 cut(s) 181, 209
Bme1390I CCNGG 2 cut(s) 233, 530
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 233, 530
BmsI GCATC 2 cut(s) 208, 259
BpiI GAAGAC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 496, 528
BpmI CTGGAG 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 6, 368
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 320, 535
BseBI CCWGG 2 cut(s) 233, 530
BseDI CCNNGG 2 cut(s) 6, 368
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 3 cut(s) 154, 320, 535
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 313, 488
BslI CCNNNNNNNGG 3 cut(s) 154, 320, 535
BsmAI GTCTC 1 cut(s) 519
BsmI GAATGC 2 cut(s) 149, 281
BsnI GGCC 2 cut(s) 313, 488
Bso31I GGTCTC 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 2 cut(s) 385, 426
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 80, 180, 208
BspANI GGCC 2 cut(s) 313, 488
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 1 cut(s) 428
BspPI GGATC 3 cut(s) 380, 421, 434
BspT104I TTCGAA 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 519
BssECI CCNNGG 2 cut(s) 6, 368
BssMI GATC 2 cut(s) 385, 426
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 233, 530
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 2 cut(s) 496, 534
BstAPI GCANNNNNTGC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 538
BstKTI GATC 2 cut(s) 388, 429
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 2 cut(s) 385, 426
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 2 cut(s) 233, 530
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 231, 528
BstSFI CTRYAG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 385, 426
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 2 cut(s) 385, 426
BsuRI GGCC 2 cut(s) 313, 488
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 167
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 2 cut(s) 47, 570
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 1 cut(s) 121
CviAII CATG 6 cut(s) 7, 42, 166, 308, 482, 579
CviJI RGCY 7 cut(s) 88, 313, 327, 341, 367, 447, 488
CviKI_1 RGCY 7 cut(s) 88, 313, 327, 341, 367, 447, 488
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 387, 428
DpnII GATC 2 cut(s) 385, 426
Eam1104I CTCTTC 2 cut(s) 496, 534
EarI CTCTTC 2 cut(s) 496, 534
Eco130I CCWWGG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 231, 528
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 6 cut(s) 10, 45, 169, 311, 485, 582
FatI CATG 6 cut(s) 6, 41, 165, 307, 481, 578
Fnu4HI GCNGC 2 cut(s) 180, 208
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 2 cut(s) 180, 208
GluI GCNGC 2 cut(s) 180, 208
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 313, 488
HgaI GACGC 2 cut(s) 47, 570
Hin1II CATG 6 cut(s) 10, 45, 169, 311, 485, 582
HinfI GANTC 4 cut(s) 137, 334, 360, 440
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 34, 229
Hpy188I TCNGA 3 cut(s) 142, 347, 372
Hpy188III TCNNGA 3 cut(s) 27, 301, 482
Hpy8I GTNNAC 2 cut(s) 34, 229
Hpy99I CGWCG 3 cut(s) 41, 128, 203
HpyAV CCTTC 2 cut(s) 62, 257
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 133, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 6 cut(s) 10, 45, 169, 311, 485, 582
Kzo9I GATC 2 cut(s) 385, 426
LpnPI CCDG 9 cut(s) 12, 119, 218, 245, 286, 377, 380, 515, 542
LweI GCATC 2 cut(s) 208, 259
MabI ACCWGGT 1 cut(s) 231
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 190, 554
MalI GATC 2 cut(s) 387, 428
MboI GATC 2 cut(s) 385, 426
MboII GAAGA 7 cut(s) 125, 281, 284, 389, 459, 483, 551
MflI RGATCY 2 cut(s) 385, 426
MluCI AATT 1 cut(s) 57
MlyI GAGTC 4 cut(s) 131, 328, 369, 449
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 8 cut(s) 121, 154, 378, 465, 478, 489, 498, 499
MslI CAYNNNNRTG 3 cut(s) 11, 170, 255
MspR9I CCNGG 2 cut(s) 233, 530
Mva1269I GAATGC 2 cut(s) 149, 281
MvaI CCWGG 2 cut(s) 233, 530
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 1 cut(s) 6
NdeII GATC 2 cut(s) 385, 426
NlaIII CATG 6 cut(s) 10, 45, 169, 311, 485, 582
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 1 cut(s) 554
NspI RCATGY 1 cut(s) 169
NspV TTCGAA 1 cut(s) 111
PaeI GCATGC 1 cut(s) 169
PagI TCATGA 1 cut(s) 481
PceI AGGCCT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PctI GAATGC 2 cut(s) 149, 281
PflMI CCANNNNNTGG 2 cut(s) 320, 535
PkrI GCNGC 2 cut(s) 181, 209
PleI GAGTC 4 cut(s) 131, 328, 368, 448
PpsI GAGTC 4 cut(s) 131, 328, 368, 448
Psp6I CCWGG 2 cut(s) 231, 528
PspGI CCWGG 2 cut(s) 231, 528
PspN4I GGNNCC 1 cut(s) 428
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 2 cut(s) 385, 426
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 3 cut(s) 11, 170, 255
SatI GCNGC 2 cut(s) 180, 208
Sau3AI GATC 2 cut(s) 385, 426
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 4 cut(s) 131, 328, 369, 449
ScrFI CCNGG 2 cut(s) 233, 530
SetI ASST 6 cut(s) 26, 132, 156, 237, 343, 481
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 2 cut(s) 208, 259
SfcI CTRYAG 1 cut(s) 355
SfuI TTCGAA 1 cut(s) 111
SmiMI CAYNNNNRTG 3 cut(s) 11, 170, 255
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
SphI GCATGC 1 cut(s) 169
Sse9I AATT 1 cut(s) 57
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 3 cut(s) 80, 180, 208
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 231, 528
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 111, 253, 443
TasI AATT 1 cut(s) 57
TauI GCSGC 2 cut(s) 182, 210
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspGWI ACGGA 2 cut(s) 389, 573
TspRI CASTG 1 cut(s) 559
Van91I CCANNNNNTGG 2 cut(s) 320, 535
XapI RAATTY 1 cut(s) 57
XceI RCATGY 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.