Rh5AG236700

SAWADEE domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000405
Physical Location & Seq
Reverse (-)
28716174 .. 28720145
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG236700.1

Sequence Viewer

Length: 702 bp
ATGGCGTTAGAGTTCCGGTCCCACAAGGACGACGCCTGGTACGACGCCCGCCTATTCACGGAGGACACCGGCGCCGGTCTCCGCCTCAGAATCACCTTCGCCAACTTCTCCGACGCCCACGACGAGTTCGTCGGCGCCAACGACCTCGCCGCCCTCCCAGACCTAGACGCATTGCGCTCCCGCGTCCGCCGCCTCTCCCTCCAGCTCCAGGACTCCGAGTGCTCCTCCGTCGACAGAGGCCTCCTCGTCTGCGCCGCCCGCTCCGTCCACCCCGACGACCGCCGCTTCTTCGACGCCTTCGTCGACGGGTGTGTAGCATTGTTAGAGGAGAGTTTGGATTCTCTAATAGTCTTTCTAATAGCAGGATACAAGCCATGTCAGGAGATCCTTAACTCCAAGCTCATCTTCCAAAGTAAGCAATCAGAGGTTTATACAAGAGGAACCATCATGTTGAACAGCAAAAAGAACCTCGACAAGTTGTCTGAATTTTTGGGAAGTCCAGATCGCATAATCATCTCGTCAACAGGAAGGCCTTGGGTTCTGACTGAGAAAATTCCCATGGATGGCACAATAAGGGCATCGATTGAACCCTTTAAGCGTACATCTCAGCTGGCAATCTCAGCAATATTGGCAAGAGGAGACCGAAAGAAGCAGATCTGGGTTCTGAAAAAGAAAGTTGTTGGAGTTCTAGTATTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAWADEE

Protein Analysis

233

Amino Acids

26.13

Weight (kDa)

8.33

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 2 - 103 2.7e-20 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25330
fragaria_vesca FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_2g12920 FvH4_3g17720 FvH4_3g17720 FvH4_3g20410 FvH4_3g20410 FvH4_5g23730 FvH4_5g23730 FvH4_5g23730 FvH4_6g40510 FvH4_6g40520 FvH4_6g40530 FvH4_6g40530
malus_domestica MD09G1128800.v1.1 MD09G1128900.v1.1 MD09G1129100.v1.1 MD17G1118100.v1.1
prunus_persica Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196400_v2.0.a1 Prupe.3G196500_v2.0.a1 Prupe.3G196500_v2.0.a1
pyrus_communis pycom09g05230 pycom09g05240 pycom10g00180 pycom17g10860
rosa_chinensis RchiOBHm_Chr2g0133241 RchiOBHm_Chr2g0133311 RchiOBHm_Chr2g0155531 RchiOBHm_Chr2g0155771 RchiOBHm_Chr2g0155781 RchiOBHm_Chr2g0155791 RchiOBHm_Chr5g0029431 RchiOBHm_Chr5g0034301 RchiOBHm_Chr7g0213061
rosa_laevigata RLG00000002835 RLG00000019323 RLG00000020863 RLG00000020864 RLG00000033165 RLG00000033538
rosa_multiflora Rmu_co8060268.1_g000001 Rmu_sc0000062.1_g000021 Rmu_sc0001121.1_g000020 Rmu_sc0001446.1_g000013 Rmu_sc0002712.1_g000021 Rmu_sc0003417.1_g000005 Rmu_sc0023254.1_g000004 Rmu_sc0024719.1_g000001 Rmu_sc0033434.1_g000002
rosa_roxburghii Rroxscaffold_1G00045970 Rroxscaffold_2G00093480 Rroxscaffold_2G00093490 Rroxscaffold_2G00093500 Rroxscaffold_2G00111280 Rroxscaffold_3G00246280 Rroxscaffold_7G00195910
rosa_rugosa Rorug02G0310900 Rorug02G0449800 Rorug02G0449900 Rorug04G0061300 Rorug05G0145100 Rorug06G0068700 Rorug07G0139100
rosa_samantha Rh2AG363400 Rh2AG515900 Rh2AG516000 Rh2BG369100 Rh2BG525000 Rh2BG526900 Rh2BG527000 Rh2CG346700 Rh2CG500900 Rh2CG501000 Rh2DG386100 Rh2DG535900 Rh2DG536000 Rh5AG236700 Rh5BG204800 Rh5BG237200 Rh5CG226800 Rh5CG267000 Rh5DG208400 Rh5DG244700 Rh7AG270400 Rh7AG270500 Rh7BG266000 Rh7CG289700 Rh7CG289800 Rh7DG278700
rosa_wichuraiana Rw2G029570 Rw2G042430 Rw2G042440 Rw5G021290 Rw7G023500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 299
AccB1I GGYRCC 2 cut(s) 71, 134
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 2 cut(s) 231, 303
AccII CGCG 1 cut(s) 183
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 2 cut(s) 485, 552
AcyI GRCGYC 6 cut(s) 33, 45, 72, 114, 135, 294
AfaI GTAC 2 cut(s) 41, 601
AfiI CCNNNNNNNGG 3 cut(s) 58, 208, 563
AgsI TTSAA 2 cut(s) 454, 587
AhdI GACNNNNNGTC 1 cut(s) 478
AjnI CCWGG 2 cut(s) 35, 207
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 3 cut(s) 205, 400, 610
AluI AGCT 3 cut(s) 205, 400, 610
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 2 cut(s) 83, 633
AlwI GGATC 1 cut(s) 379
AoxI GGCC 2 cut(s) 238, 530
ApoI RAATTY 2 cut(s) 485, 552
AspLEI GCGC 4 cut(s) 74, 137, 177, 254
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 18
BanI GGYRCC 2 cut(s) 71, 134
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 2 cut(s) 452, 557
BciT130I CCWGG 2 cut(s) 37, 209
BciVI GTATCC 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 83, 633
BfaI CTAG 2 cut(s) 164, 689
BfoI RGCGCY 2 cut(s) 75, 138
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 1 cut(s) 654
BisI GCNGC 4 cut(s) 150, 190, 255, 283
BlsI GCNGC 4 cut(s) 151, 191, 256, 284
Bme1390I CCNGG 2 cut(s) 37, 209
Bme18I GGWCC 1 cut(s) 18
BmeRI GACNNNNNGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 4 cut(s) 20, 73, 136, 442
BmrFI CCNGG 2 cut(s) 37, 209
BmsI GCATC 1 cut(s) 587
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 228, 260
BpmI CTGGAG 2 cut(s) 185, 191
Bsa29I ATCGAT 1 cut(s) 581
BsaHI GRCGYC 6 cut(s) 33, 45, 72, 114, 135, 294
BsaI GGTCTC 2 cut(s) 83, 633
BsaJI CCNNGG 2 cut(s) 533, 558
BsaWI WCCGGW 1 cut(s) 15
BsaXI ACNNNNNCTCC 1 cut(s) 675
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 208, 563
Bse118I RCCGGY 2 cut(s) 68, 74
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 2 cut(s) 37, 209
BseCI ATCGAT 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 533, 558
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 3 cut(s) 58, 208, 563
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 4 cut(s) 100, 537, 620, 633
BseRI GAGGAG 4 cut(s) 214, 233, 341, 651
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 2 cut(s) 240, 532
BshNI GGYRCC 2 cut(s) 71, 134
BshVI ATCGAT 1 cut(s) 581
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 3 cut(s) 16, 69, 75
BslFI GGGAC 1 cut(s) 4
BslI CCNNNNNNNGG 3 cut(s) 58, 208, 563
BsmAI GTCTC 2 cut(s) 83, 633
BsmFI GGGAC 1 cut(s) 4
BsnI GGCC 2 cut(s) 240, 532
Bso31I GGTCTC 2 cut(s) 83, 633
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 3 cut(s) 384, 502, 654
Bsp19I CCATGG 1 cut(s) 558
BspANI GGCC 2 cut(s) 240, 532
BspCNI CTCAG 4 cut(s) 99, 538, 619, 632
BspDI ATCGAT 1 cut(s) 581
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 4 cut(s) 20, 73, 136, 442
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 2 cut(s) 71, 134
BspTNI GGTCTC 2 cut(s) 83, 633
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 170
BsrFI RCCGGY 2 cut(s) 68, 74
BssAI RCCGGY 2 cut(s) 68, 74
BssECI CCNNGG 2 cut(s) 533, 558
BssMI GATC 3 cut(s) 384, 502, 654
BssNI GRCGYC 6 cut(s) 33, 45, 72, 114, 135, 294
BssT1I CCWWGG 2 cut(s) 533, 558
Bst2UI CCWGG 2 cut(s) 37, 209
BstACI GRCGYC 6 cut(s) 33, 45, 72, 114, 135, 294
BstC8I GCNNGC 3 cut(s) 49, 259, 612
BstDEI CTNAG 4 cut(s) 86, 546, 606, 619
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 2 cut(s) 75, 138
BstHHI GCGC 4 cut(s) 74, 137, 177, 254
BstKTI GATC 3 cut(s) 387, 505, 657
BstMAI GTCTC 2 cut(s) 83, 633
BstMBI GATC 3 cut(s) 384, 502, 654
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 189, 258, 620, 629
BstNI CCWGG 2 cut(s) 37, 209
BstSCI CCNGG 2 cut(s) 35, 207
BstUI CGCG 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 384, 654
BstYI RGATCY 2 cut(s) 384, 654
Bsu15I ATCGAT 1 cut(s) 581
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 2 cut(s) 240, 532
BsuTUI ATCGAT 1 cut(s) 581
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 3 cut(s) 49, 259, 612
CfoI GCGC 4 cut(s) 74, 137, 177, 254
Cfr10I RCCGGY 2 cut(s) 68, 74
Cfr13I GGNCC 1 cut(s) 18
ClaI ATCGAT 1 cut(s) 581
CseI GACGC 6 cut(s) 41, 53, 122, 172, 176, 302
Csp6I GTAC 2 cut(s) 40, 600
CviAII CATG 3 cut(s) 375, 448, 559
CviJI RGCY 6 cut(s) 205, 240, 373, 400, 532, 610
CviKI_1 RGCY 6 cut(s) 205, 240, 373, 400, 532, 610
CviQI GTAC 2 cut(s) 40, 600
DdeI CTNAG 4 cut(s) 86, 546, 606, 619
DinI GGCGCC 2 cut(s) 73, 136
DpnI GATC 3 cut(s) 386, 504, 656
DpnII GATC 3 cut(s) 384, 502, 654
DrdI GACNNNNNNGTC 2 cut(s) 128, 299
DriI GACNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 2 cut(s) 128, 299
Eam1105I GACNNNNNGTC 1 cut(s) 478
EciI GGCGGA 2 cut(s) 71, 176
Eco130I CCWWGG 2 cut(s) 533, 558
Eco147I AGGCCT 2 cut(s) 240, 532
Eco31I GGTCTC 2 cut(s) 83, 633
Eco47I GGWCC 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 35, 207
EcoT14I CCWWGG 2 cut(s) 533, 558
EgeI GGCGCC 2 cut(s) 73, 136
EheI GGCGCC 2 cut(s) 73, 136
ErhI CCWWGG 2 cut(s) 533, 558
FaeI CATG 3 cut(s) 378, 451, 562
FaiI YATR 6 cut(s) 376, 432, 449, 509, 560, 700
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 4
FatI CATG 3 cut(s) 374, 447, 558
FauI CCCGC 3 cut(s) 56, 188, 266
FblI GTMKAC 2 cut(s) 231, 303
Fnu4HI GCNGC 4 cut(s) 150, 190, 255, 283
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 4 cut(s) 150, 190, 255, 283
FspBI CTAG 2 cut(s) 164, 689
GlaI GCGC 4 cut(s) 73, 136, 176, 253
GluI GCNGC 4 cut(s) 150, 190, 255, 283
GsuI CTGGAG 2 cut(s) 185, 191
HaeII RGCGCY 2 cut(s) 75, 138
HaeIII GGCC 2 cut(s) 240, 532
HapII CCGG 3 cut(s) 16, 69, 75
HgaI GACGC 6 cut(s) 41, 53, 122, 172, 176, 302
HhaI GCGC 4 cut(s) 74, 137, 177, 254
Hin1I GRCGYC 6 cut(s) 33, 45, 72, 114, 135, 294
Hin1II CATG 3 cut(s) 378, 451, 562
Hin6I GCGC 4 cut(s) 72, 135, 175, 252
HinP1I GCGC 4 cut(s) 72, 135, 175, 252
HincII GTYRAC 3 cut(s) 232, 304, 522
HindII GTYRAC 3 cut(s) 232, 304, 522
HinfI GANTC 3 cut(s) 90, 212, 338
HpaII CCGG 3 cut(s) 16, 69, 75
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 232, 268, 304, 522
Hpy188I TCNGA 7 cut(s) 89, 112, 217, 424, 484, 543, 666
Hpy188III TCNNGA 2 cut(s) 380, 500
Hpy8I GTNNAC 4 cut(s) 232, 268, 304, 522
HpyAV CCTTC 3 cut(s) 106, 307, 522
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 258, 620, 629
HpyF3I CTNAG 4 cut(s) 86, 546, 606, 619
Hsp92I GRCGYC 6 cut(s) 33, 45, 72, 114, 135, 294
Hsp92II CATG 3 cut(s) 378, 451, 562
HspAI GCGC 4 cut(s) 72, 135, 175, 252
KasI GGCGCC 2 cut(s) 71, 134
Kzo9I GATC 3 cut(s) 384, 502, 654
LmnI GCTCC 4 cut(s) 182, 210, 227, 266
LweI GCATC 1 cut(s) 587
MaeI CTAG 2 cut(s) 164, 689
MalI GATC 3 cut(s) 386, 504, 656
MbiI CCGCTC 1 cut(s) 261
MboI GATC 3 cut(s) 384, 502, 654
MboII GAAGA 2 cut(s) 280, 397
MflI RGATCY 2 cut(s) 384, 654
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 2 cut(s) 485, 552
Mly113I GGCGCC 2 cut(s) 72, 135
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 135, 661
MseI TTAA 2 cut(s) 390, 594
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 3 cut(s) 16, 69, 75
MspR9I CCNGG 2 cut(s) 37, 209
MvaI CCWGG 2 cut(s) 37, 209
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 189, 258, 620, 629
NarI GGCGCC 2 cut(s) 72, 135
NcoI CCATGG 1 cut(s) 558
NdeII GATC 3 cut(s) 384, 502, 654
NlaIII CATG 3 cut(s) 378, 451, 562
NlaIV GGNNCC 4 cut(s) 20, 73, 136, 442
PceI AGGCCT 2 cut(s) 240, 532
PcsI WCGNNNNNNNCGW 6 cut(s) 39, 120, 126, 138, 297, 300
PfeI GAWTC 2 cut(s) 90, 338
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 4 cut(s) 151, 191, 256, 284
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 2 cut(s) 75, 138
PpsI GAGTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 35, 207
PspGI CCWGG 2 cut(s) 35, 207
PspN4I GGNNCC 4 cut(s) 20, 73, 136, 442
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 2 cut(s) 384, 654
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 2 cut(s) 41, 601
RsaNI GTAC 2 cut(s) 40, 600
SalI GTCGAC 2 cut(s) 230, 302
SaqAI TTAA 2 cut(s) 390, 594
SatI GCNGC 4 cut(s) 150, 190, 255, 283
Sau3AI GATC 3 cut(s) 384, 502, 654
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 37, 209
SduI GDGCHC 1 cut(s) 224
SetI ASST 8 cut(s) 98, 147, 165, 207, 402, 429, 471, 612
SfaNI GCATC 1 cut(s) 587
SfoI GGCGCC 2 cut(s) 73, 136
SgrAI CRCCGGYG 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 302
SinI GGWCC 1 cut(s) 18
Sse9I AATT 2 cut(s) 485, 552
SseBI AGGCCT 2 cut(s) 240, 532
SspDI GGCGCC 2 cut(s) 71, 134
SspI AATATT 1 cut(s) 627
SspMI CTAG 2 cut(s) 164, 689
StuI AGGCCT 2 cut(s) 240, 532
StyD4I CCNGG 2 cut(s) 35, 207
StyI CCWWGG 2 cut(s) 533, 558
TaqI TCGA 5 cut(s) 231, 291, 303, 471, 581
TaqII GACCGA 1 cut(s) 657
TasI AATT 2 cut(s) 485, 552
TauI GCSGC 4 cut(s) 152, 192, 257, 285
TfiI GAWTC 2 cut(s) 90, 338
Tru1I TTAA 2 cut(s) 390, 594
Tru9I TTAA 2 cut(s) 390, 594
TspGWI ACGGA 3 cut(s) 74, 217, 253
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 2 cut(s) 485, 552
XmiI GTMKAC 2 cut(s) 231, 303
XspI CTAG 2 cut(s) 164, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.