FvH4_3g09630
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000656
Physical Location & Seq
Reverse (-)
5594151 .. 5595964
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09630.t1

Sequence Viewer

Length: 747 bp
ATGGCAACCCCAGTAAGTCTAGAAAATGATATCTCCGCTTATTATTTGGGAAGTTCGATTTGCATTCAGATGGCTCAAAGAGCTGCAATAGAGCTCGATGTCTTCAATATCATTGCTAAGTCAGGGCCAGAAGCTCATCTTACATCGAAAGAAATTGTTTCAGAAATCCCCACCACAGATCCAAATGCAGCAGCTGAGAATCTAGAGCGAATCCTCAACCTTCTCAGTGCCGTCAAATCCCTCCTTTCTACATATCTCAAACAAAGACACAATGACAAAACACCACAAAGGGCTTATGGTCTAACAAAAGAAGTACTACTGTGCCTAGTGCCAAATGAAGATGGAGTTTCGTTCACATCAGAAATTATCTCAGGCTCTGAAATGCACATTATACAGAGCTTATGCATGCTCAAGCACCCGGTGCTGGAACCGGGGAGTGTTCCTTTCTGTAAAGCCCATGGAGTAAGCTTCTACGAGTTCATGTCCGAGAGACCTGAGATGATTTCATGGTTCAACAAGCACATGAGAACTGCCTCTTATTTACATTTTGATCTGAAGGTTCTCAAGGTCTATGAAGGTTTTGAAGAAGTGAAAGAGCTGATGGATGCAGGGGGTGGTGATGGAAGTTCCCTCGCAAAAATTGTGTCTATGTATCCTCATATCCATGGCATCAATTTCGACATCTCTAGTGTCATTGTTCAGGCTCCTAATTATCAAGGTGTGAAACATGTAAGTGGAGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

249

Amino Acids

27.38

Weight (kDa)

5.55

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 20 - 102 1.1e-07 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 137 - 247 1.3e-19 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 36
AclWI GGATC 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 575
AdeI CACNNNGTG 1 cut(s) 421
AfaI GTAC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 424
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 3 cut(s) 106, 514, 584
AluBI AGCT 7 cut(s) 83, 94, 134, 194, 399, 468, 598
AluI AGCT 7 cut(s) 83, 94, 134, 194, 399, 468, 598
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 2 cut(s) 194, 377
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 83, 188, 191
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 419, 432
AsuHPI GGTGA 1 cut(s) 629
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 70, 200, 203
BccI CCATC 4 cut(s) 64, 335, 595, 614
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BciVI GTATCC 1 cut(s) 663
BcnI CCSGG 2 cut(s) 419, 432
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 4 cut(s) 20, 203, 326, 687
BfuI GTATCC 1 cut(s) 663
BisI GCNGC 3 cut(s) 84, 189, 192
BlsI GCNGC 3 cut(s) 85, 190, 193
BmcAI AGTACT 1 cut(s) 315
Bme1390I CCNGG 2 cut(s) 419, 432
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 429, 705
BmrFI CCNGG 2 cut(s) 419, 432
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 2 cut(s) 595, 678
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 94
BpuEI CTTGAG 2 cut(s) 395, 548
BpuMI CCSGG 2 cut(s) 419, 432
BsaI GGTCTC 1 cut(s) 484
BsaJI CCNNGG 3 cut(s) 431, 457, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 431, 457, 664
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 4 cut(s) 186, 238, 384, 486
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 3 cut(s) 70, 200, 203
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 419, 431
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 484
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 178, 550
Bsp19I CCATGG 2 cut(s) 457, 664
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 187, 237, 383, 487
BspLI GGNNCC 2 cut(s) 429, 705
BspPI GGATC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 3 cut(s) 431, 457, 664
BssMI GATC 2 cut(s) 178, 550
BssT1I CCWWGG 2 cut(s) 457, 664
Bst4CI ACNGT 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 5 cut(s) 117, 195, 224, 370, 495
BstDSI CCRYGG 2 cut(s) 457, 664
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 2 cut(s) 181, 553
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 2 cut(s) 178, 550
BstMWI GCNNNNNNNGC 2 cut(s) 80, 421
BstNSI RCATGY 2 cut(s) 409, 731
BstSCI CCNGG 2 cut(s) 417, 430
BstV1I GCAGC 3 cut(s) 70, 200, 203
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuI GTATCC 1 cut(s) 663
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 2 cut(s) 457, 664
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 407
CaiI CAGNNNCTG 2 cut(s) 194, 377
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 314
CviAII CATG 7 cut(s) 406, 458, 481, 507, 523, 665, 728
CviQI GTAC 1 cut(s) 314
DdeI CTNAG 5 cut(s) 117, 195, 224, 370, 495
DpnI GATC 2 cut(s) 180, 552
DpnII GATC 2 cut(s) 178, 550
DraIII CACNNNGTG 1 cut(s) 421
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 457, 664
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 484
Eco32I GATATC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 94
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 2 cut(s) 457, 664
EcoT22I ATGCAT 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 457, 664
FaeI CATG 7 cut(s) 409, 461, 484, 510, 526, 668, 731
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 7 cut(s) 405, 457, 480, 506, 522, 664, 727
Fnu4HI GCNGC 3 cut(s) 84, 189, 192
FokI GGATG 1 cut(s) 617
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 84, 189, 192
FspBI CTAG 4 cut(s) 20, 203, 326, 687
GluI GCNGC 3 cut(s) 84, 189, 192
HaeIII GGCC 1 cut(s) 127
HapII CCGG 2 cut(s) 419, 431
Hin1II CATG 7 cut(s) 409, 461, 484, 510, 526, 668, 731
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 2 cut(s) 199, 210
HpaII CCGG 2 cut(s) 419, 431
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 6 cut(s) 69, 163, 361, 379, 487, 555
Hpy188III TCNNGA 2 cut(s) 20, 203
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 3 cut(s) 230, 550, 569
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4V TGCA 6 cut(s) 63, 86, 188, 385, 405, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 421
HpyF3I CTNAG 5 cut(s) 117, 195, 224, 370, 495
Hsp92II CATG 7 cut(s) 409, 461, 484, 510, 526, 668, 731
Kzo9I GATC 2 cut(s) 178, 550
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 3 cut(s) 70, 200, 203
LweI GCATC 2 cut(s) 595, 678
MaeI CTAG 4 cut(s) 20, 203, 326, 687
MalI GATC 2 cut(s) 180, 552
MboI GATC 2 cut(s) 178, 550
MboII GAAGA 3 cut(s) 94, 350, 596
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 153, 363, 639, 673, 709
MnlI CCTC 5 cut(s) 224, 251, 544, 641, 666
Mph1103I ATGCAT 1 cut(s) 407
MslI CAYNNNNRTG 3 cut(s) 68, 663, 732
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 2 cut(s) 419, 431
MspR9I CCNGG 2 cut(s) 419, 432
Mva1269I GAATGC 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 80, 421
NciI CCSGG 2 cut(s) 419, 432
NcoI CCATGG 2 cut(s) 457, 664
NdeII GATC 2 cut(s) 178, 550
NlaIII CATG 7 cut(s) 409, 461, 484, 510, 526, 668, 731
NlaIV GGNNCC 2 cut(s) 429, 705
NsiI ATGCAT 1 cut(s) 407
NspI RCATGY 2 cut(s) 409, 731
PaeI GCATGC 1 cut(s) 409
PciI ACATGT 1 cut(s) 727
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 199, 210
PkrI GCNGC 3 cut(s) 85, 190, 193
PscI ACATGT 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 429, 705
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 2 cut(s) 194, 377
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 315
RsaNI GTAC 1 cut(s) 314
RseI CAYNNNNRTG 3 cut(s) 68, 663, 732
SacI GAGCTC 1 cut(s) 96
SatI GCNGC 3 cut(s) 84, 189, 192
Sau3AI GATC 2 cut(s) 178, 550
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 419, 432
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 2 cut(s) 595, 678
SmiMI CAYNNNNRTG 3 cut(s) 68, 663, 732
SmlI CTYRAG 2 cut(s) 410, 563
SmoI CTYRAG 2 cut(s) 410, 563
SphI GCATGC 1 cut(s) 409
Sse9I AATT 5 cut(s) 153, 363, 639, 673, 709
SsiI CCGC 1 cut(s) 36
SspMI CTAG 4 cut(s) 20, 203, 326, 687
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 417, 430
StyI CCWWGG 2 cut(s) 457, 664
TaaI ACNGT 1 cut(s) 321
TaqI TCGA 4 cut(s) 56, 96, 146, 678
TasI AATT 5 cut(s) 153, 363, 639, 673, 709
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 2 cut(s) 199, 210
TscAI CASTG 1 cut(s) 232
TseI GCWGC 3 cut(s) 83, 188, 191
TspDTI ATGAA 4 cut(s) 351, 469, 495, 588
TspRI CASTG 1 cut(s) 232
XbaI TCTAGA 2 cut(s) 19, 202
XceI RCATGY 2 cut(s) 409, 731
XspI CTAG 4 cut(s) 20, 203, 326, 687
ZrmI AGTACT 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.