RchiOBHm_Chr5g0056661
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000656
Physical Location & Seq
Forward (+)
60423392 .. 60424454
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33354

Sequence Viewer

Length: 351 bp
ATGTTCGAGTTGATACCAAATGCAGAGTCCATTATGTTGAAGTGGGTGCTTCATAATTGGGACGATGATCTATGCAAGAAAATATTAGAACGTTGTTGGCAGGCATTACCTGAAATCGGGAAGGTGATAGTTGTGGAATTTGCATTACCCGAAATACTGGAGAAAACCACAGATTTAAAGAAAATACTGGCATTAGACATCATCATGATGAGTATTTTTTGTGGTAGGCAACGAACAATTAATGAGTTTGACGGCCTATCGAAAGCTGCAGGCTTTGTTGAAACAAAGATTTTTCCGATTTCACATGGGTTTTATGTTATGGAGTTTCACAAAGTTAAAAAAAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

116

Amino Acids

13.53

Weight (kDa)

6.82

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 1 - 92 7.9e-22 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 91
AcsI RAATTY 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 40, 281
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 137
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AseI ATTAAT 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 136
BbvI GCAGC 1 cut(s) 253
BceAI ACGGC 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 162, 192
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 162, 192
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 67
BspANI GGCC 1 cut(s) 255
BspHI TCATGA 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 271
BsrI ACTGG 2 cut(s) 162, 192
BssMI GATC 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 102, 271
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 102, 271
CciI TCATGA 1 cut(s) 204
CviAII CATG 2 cut(s) 205, 305
CviJI RGCY 3 cut(s) 255, 266, 273
CviKI_1 RGCY 3 cut(s) 255, 266, 273
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DraI TTTAAA 1 cut(s) 177
FaeI CATG 2 cut(s) 208, 308
FaiI YATR 7 cut(s) 35, 54, 73, 206, 306, 315, 320
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 204, 304
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 2 cut(s) 208, 308
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 2 cut(s) 118, 205
HpyAV CCTTC 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 23, 75, 143, 269
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 2 cut(s) 208, 308
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 86, 123, 143, 173, 255
Lsp1109I GCAGC 1 cut(s) 253
MaeII ACGT 1 cut(s) 91
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MluCI AATT 3 cut(s) 55, 137, 237
MlyI GAGTC 1 cut(s) 35
MseI TTAA 3 cut(s) 176, 240, 336
MslI CAYNNNNRTG 2 cut(s) 203, 206
NdeII GATC 1 cut(s) 67
NlaIII CATG 2 cut(s) 208, 308
PagI TCATGA 1 cut(s) 204
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 91
PstI CTGCAG 1 cut(s) 271
RseI CAYNNNNRTG 2 cut(s) 203, 206
SaqAI TTAA 3 cut(s) 176, 240, 336
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 35
SetI ASST 4 cut(s) 94, 112, 126, 268
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 203, 206
Sse9I AATT 3 cut(s) 55, 137, 237
SspI AATATT 1 cut(s) 84
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 6, 260
TasI AATT 3 cut(s) 55, 137, 237
Tru1I TTAA 3 cut(s) 176, 240, 336
Tru9I TTAA 3 cut(s) 176, 240, 336
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 41
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.