RLG00000034388
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000656
Physical Location & Seq
Forward (+)
41876479 .. 41877053
575 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034388

Sequence Viewer

Length: 408 bp
ATGACTTTAAAAGCTGCAGTAGAGCTCAGTGTCTTCAATATCATTTATGAGTCAGGGCGTGGAGTTCATCTCACATCAGAAGAAATCAAAAATCCGAGTGCAGCAATTGCGAATTTGGAGCGAATACTAAAACTGCTCAGCGTCAACTCCCTCCTTTCCGCATCTCTAAGACCAAGTGCAAATGACAACACGGTGCAAGCCGCATCTCTAAGACCAAGTGCAAATGACAACACGGTGCAAGAAATGGCTGATGGCCTAACAAAGAAGAGCTTGTACGTGCTTAAACACATGATGCTTGAACCAGAGTGTTCTCCTTTCGACAAAGCCCACGGACAAACCTTGGATGAATATATGTCCCAGAAGCCTGAGCTGATTCAATTGTTTGATGAGACTGAAGACCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

136

Amino Acids

14.92

Weight (kDa)

5.01

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 159, 201
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 3 cut(s) 37, 299, 377
AluBI AGCT 4 cut(s) 14, 25, 270, 370
AluI AGCT 4 cut(s) 14, 25, 270, 370
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 383
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 2 cut(s) 14, 101
ApoI RAATTY 1 cut(s) 112
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 257, 289
BbsI GAAGAC 2 cut(s) 25, 402
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 15, 102, 201
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 3 cut(s) 16, 103, 202
BmsI GCATC 3 cut(s) 170, 212, 282
BpiI GAAGAC 2 cut(s) 25, 402
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 328, 339
BseDI CCNNGG 2 cut(s) 328, 339
BseGI GGATG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 40, 151, 357
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 27
BslFI GGGAC 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 137
BspACI CCGC 2 cut(s) 159, 201
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 3 cut(s) 39, 150, 358
BspMAI CTGCAG 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 328, 339
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 193, 235
Bst6I CTCTTC 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 5 cut(s) 26, 137, 167, 209, 366
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 383
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 2 cut(s) 25, 402
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 198
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 289
CviJI RGCY 9 cut(s) 14, 25, 200, 248, 255, 270, 326, 364, 370
CviKI_1 RGCY 9 cut(s) 14, 25, 200, 248, 255, 270, 326, 364, 370
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 5 cut(s) 26, 137, 167, 209, 366
DraI TTTAAA 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 48, 290, 351, 353
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 15, 102, 201
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 3 cut(s) 15, 102, 201
GluI GCNGC 3 cut(s) 15, 102, 201
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 130
Hin1II CATG 1 cut(s) 292
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 50, 373
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 79, 96
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4III ACNGT 2 cut(s) 193, 235
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 6 cut(s) 17, 101, 179, 196, 221, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 5 cut(s) 26, 137, 167, 209, 366
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 292
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 39, 315, 371, 378
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 3 cut(s) 170, 212, 282
MaeII ACGT 1 cut(s) 276
MboII GAAGA 4 cut(s) 25, 92, 277, 407
MfeI CAATTG 2 cut(s) 105, 377
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 105, 112, 377
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 1 cut(s) 161
MseI TTAA 2 cut(s) 8, 282
MunI CAATTG 2 cut(s) 105, 377
MwoI GCNNNNNNNGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 3 cut(s) 16, 103, 202
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 8, 282
SatI GCNGC 3 cut(s) 15, 102, 201
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 27
SetI ASST 7 cut(s) 16, 27, 272, 279, 341, 372, 402
SfaNI GCATC 3 cut(s) 170, 212, 282
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 105, 112, 377
SsiI CCGC 2 cut(s) 159, 201
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 193, 235
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 105, 112, 377
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 2 cut(s) 8, 282
Tru9I TTAA 2 cut(s) 8, 282
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 14, 101
TspDTI ATGAA 2 cut(s) 56, 360
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.