Rmu_sc0004232.1_g000023
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004232.1
OG0000656
Physical Location & Seq
Reverse (-)
125500 .. 126904
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004232.1_g000023.1.cds

Sequence Viewer

Length: 894 bp
atggctctaaaagctgcaatcgaactcaatgtcttcaatatcatagccaattcaggacctggtgctcatctcacatcgaaagaaattgtatctcaaatctccaccatgaatccaaatgtcgcagctaagaatttgaagcgaatattaagagttctaagtgcgcattctttgttatctatatctcaaaggccaagcttaaatggtaagacagaactagaagagacttatggtttaacaaatgatactctttgcctagttccaaatgaagatggagtttccttggctccatatattatctttgcttctgatatgacccttgtgaaaagcttgtccatgctcaaagaaacagtgcttgaacctgggagcattcctttcaacaagactcatggtgtgtccatgtatgagtacatgtctgagaaacctgagctgagccaattgtttaataaggctatgggacaaagttccatccttgattttgaagaggtgttaaatgtttacaaaggttttgaagaggtaaaagagttgatggatgttgcaggaggcactggaactacaatttccaaagtagtatctaggtatccacacattcaaggaattaacttcgatttacctaatgttgtcgctcaaggaattgctaaataccaagcagcattaccagaaatcgggaaggtaatagttgtggagtttgcaataccagaaatagtggagaaaaccgcagatttggagaaaatagtgacattagacatcataatgatggcttatcacggtagtaaagaacgaacaattgctgagtttgactacctatcgaaagctgcaggattcagtgaaatgaagatttttccgatttcacatggttgttatgttatggaacttcacaaagttaaaacatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

297

Amino Acids

32.67

Weight (kDa)

5.57

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 162
AciI CCGC 1 cut(s) 714
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 7 cut(s) 37, 136, 356, 376, 479, 509, 590
AjnI CCWGG 2 cut(s) 58, 358
AluBI AGCT 6 cut(s) 14, 125, 195, 327, 427, 812
AluI AGCT 6 cut(s) 14, 125, 195, 327, 427, 812
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 4 cut(s) 14, 122, 647, 812
ApoI RAATTY 1 cut(s) 130
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 56
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 134, 659, 799
BccI CCATC 4 cut(s) 263, 473, 520, 748
BciT130I CCWGG 2 cut(s) 60, 360
BciVI GTATCC 1 cut(s) 588
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 3 cut(s) 215, 254, 573
BfmI CTRYAG 1 cut(s) 813
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 4 cut(s) 15, 123, 648, 813
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 4 cut(s) 16, 124, 649, 814
Bme1390I CCNGG 2 cut(s) 60, 360
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 60, 360
BpiI GAAGAC 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 279, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 550
BseBI CCWGG 2 cut(s) 60, 360
BseDI CCNNGG 2 cut(s) 279, 359
BseGI GGATG 2 cut(s) 465, 535
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 4 cut(s) 405, 414, 419, 780
BseNI ACTGG 1 cut(s) 550
BseXI GCAGC 3 cut(s) 134, 659, 799
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 2 cut(s) 163, 366
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1720I GCTNAGC 1 cut(s) 428
BspACI CCGC 1 cut(s) 714
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 4 cut(s) 406, 415, 420, 781
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 817
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 279, 359
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 60, 360
Bst4CI ACNGT 2 cut(s) 349, 767
Bst6I CTCTTC 3 cut(s) 213, 474, 504
BstDEI CTNAG 6 cut(s) 126, 155, 414, 423, 428, 789
BstF5I GGATG 2 cut(s) 465, 535
BstHHI GCGC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 60, 360
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 58, 358
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 3 cut(s) 134, 659, 799
BstV2I GAAGAC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 465, 535
BtsIMutI CAGTG 3 cut(s) 354, 543, 829
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 58
Csp6I GTAC 1 cut(s) 406
CviAII CATG 6 cut(s) 106, 334, 386, 397, 409, 851
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 6 cut(s) 126, 155, 414, 423, 428, 789
Eam1104I CTCTTC 3 cut(s) 213, 474, 504
EarI CTCTTC 3 cut(s) 213, 474, 504
Eco130I CCWWGG 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 58, 358
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 109, 337, 389, 400, 412, 854
FaqI GGGAC 1 cut(s) 468
FatI CATG 6 cut(s) 105, 333, 385, 396, 408, 850
Fnu4HI GCNGC 4 cut(s) 15, 123, 648, 813
FokI GGATG 2 cut(s) 452, 542
Fsp4HI GCNGC 4 cut(s) 15, 123, 648, 813
FspAI RTGCGCAY 1 cut(s) 162
FspBI CTAG 3 cut(s) 215, 254, 573
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 1 cut(s) 162
GluI GCNGC 4 cut(s) 15, 123, 648, 813
HaeIII GGCC 1 cut(s) 190
HhaI GCGC 1 cut(s) 163
Hin1II CATG 6 cut(s) 109, 337, 389, 400, 412, 854
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HindIII AAGCTT 2 cut(s) 193, 325
HinfI GANTC 3 cut(s) 109, 382, 819
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 3 cut(s) 307, 415, 843
Hpy188III TCNNGA 2 cut(s) 54, 664
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 349, 767
HpyCH4V TGCA 4 cut(s) 17, 536, 689, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 6 cut(s) 126, 155, 414, 423, 428, 789
Hsp92II CATG 6 cut(s) 109, 337, 389, 400, 412, 854
HspAI GCGC 1 cut(s) 161
LmnI GCTCC 2 cut(s) 289, 363
Lsp1109I GCAGC 3 cut(s) 134, 659, 799
MabI ACCWGGT 1 cut(s) 58
MaeI CTAG 3 cut(s) 215, 254, 573
MaeIII GTNAC 1 cut(s) 733
MboII GAAGA 6 cut(s) 25, 230, 278, 491, 521, 844
MfeI CAATTG 2 cut(s) 434, 783
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 8 cut(s) 49, 84, 130, 434, 555, 594, 630, 783
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 3 cut(s) 475, 505, 533
MseI TTAA 7 cut(s) 146, 197, 233, 441, 488, 597, 882
MslI CAYNNNNRTG 2 cut(s) 749, 752
MspR9I CCNGG 2 cut(s) 60, 360
MunI CAATTG 2 cut(s) 434, 783
Mva1269I GAATGC 2 cut(s) 163, 366
MvaI CCWGG 2 cut(s) 60, 360
MwoI GCNNNNNNNGC 1 cut(s) 11
NlaIII CATG 6 cut(s) 109, 337, 389, 400, 412, 854
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 733
NsbI TGCGCA 1 cut(s) 162
NspI RCATGY 1 cut(s) 412
PciI ACATGT 1 cut(s) 408
PctI GAATGC 2 cut(s) 163, 366
PfeI GAWTC 2 cut(s) 109, 819
PkrI GCNGC 4 cut(s) 16, 124, 649, 814
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 58, 358
PspGI CCWGG 2 cut(s) 58, 358
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PstI CTGCAG 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 2 cut(s) 749, 752
SaqAI TTAA 7 cut(s) 146, 197, 233, 441, 488, 597, 882
SatI GCNGC 4 cut(s) 15, 123, 648, 813
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 60, 360
SduI GDGCHC 1 cut(s) 67
SexAI ACCWGGT 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 813
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 749, 752
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 8 cut(s) 49, 84, 130, 434, 555, 594, 630, 783
SsiI CCGC 1 cut(s) 714
SspI AATATT 1 cut(s) 144
SspMI CTAG 3 cut(s) 215, 254, 573
StyD4I CCNGG 2 cut(s) 58, 358
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 349, 767
TaqI TCGA 4 cut(s) 21, 77, 603, 806
TasI AATT 8 cut(s) 49, 84, 130, 434, 555, 594, 630, 783
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 2 cut(s) 109, 819
Tru1I TTAA 7 cut(s) 146, 197, 233, 441, 488, 597, 882
Tru9I TTAA 7 cut(s) 146, 197, 233, 441, 488, 597, 882
TscAI CASTG 3 cut(s) 354, 550, 829
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 4 cut(s) 14, 122, 647, 812
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 3 cut(s) 122, 279, 845
TspRI CASTG 3 cut(s) 354, 550, 829
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 130
XceI RCATGY 1 cut(s) 412
XspI CTAG 3 cut(s) 215, 254, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.