pycom05g25920
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
27212415 .. 27212821
407 bp
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UTR
Exon/CDS
Intron
pycom05g25920.1

Sequence Viewer

Length: 366 bp
ATGTTGAAGGAGATAGACTCTACATGTATTAGAAAAGTAGCACAATGCGGTTTTCATCTCCCTAGCATTACTCTTTATCAAAAATACTATTCCGGGCGTTGGAACGATGATGTGTGCGTTAAGTTATTGAAAAACTGTTGGAATGCGTTACCGGAAACTGGGAAGGTAATAGTTGCGGAATTTGTAGTACCTGAAGTACTAGAAAATACACCGGAGACAAGGAAGACACTCGTATTTAGACATAACGATGATGTTGAATTTGATAACCTAGCAAAATCTGCAGGTTTTGTTGGAACACGGCTTTCTCCAATTTCATATGGATGTCATGCGACAGAGTTTCTCAAGGGAAAACCATTAAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.72

Weight (kDa)

8.6

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 34 - 96 3.5e-09 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 272
AciI CCGC 2 cut(s) 48, 176
AcsI RAATTY 2 cut(s) 179, 257
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 189, 198
AfiI CCNNNNNNNGG 2 cut(s) 99, 158
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 3 cut(s) 7, 130, 257
Alw26I GTCTC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 179, 257
AsuC2I CCSGG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 314
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 3 cut(s) 63, 200, 269
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 272
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 94
BsaWI WCCGGW 2 cut(s) 151, 211
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 158
Bse1I ACTGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 99, 158
BseNI ACTGG 1 cut(s) 163
BsiSI CCGG 3 cut(s) 93, 152, 212
BslI CCNNNNNNNGG 2 cut(s) 99, 158
BsmAI GTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 148
BspACI CCGC 2 cut(s) 48, 176
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 278
BstF5I GGATG 1 cut(s) 326
BstMAI GTCTC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 326
BveI ACCTGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 188, 197
CviAII CATG 2 cut(s) 24, 326
CviJI RGCY 1 cut(s) 301
CviKI_1 RGCY 1 cut(s) 301
CviQI GTAC 2 cut(s) 188, 197
Eco57I CTGAAG 1 cut(s) 213
FaeI CATG 2 cut(s) 27, 329
FaiI YATR 5 cut(s) 25, 243, 316, 318, 327
FatI CATG 2 cut(s) 23, 325
FauNDI CATATG 1 cut(s) 316
FokI GGATG 1 cut(s) 333
FspBI CTAG 3 cut(s) 63, 200, 269
HapII CCGG 3 cut(s) 93, 152, 212
Hin1II CATG 2 cut(s) 27, 329
HinfI GANTC 1 cut(s) 17
HpaII CCGG 3 cut(s) 93, 152, 212
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
Hsp92II CATG 2 cut(s) 27, 329
LpnPI CCDG 6 cut(s) 106, 144, 165, 204, 225, 267
MaeI CTAG 3 cut(s) 63, 200, 269
MaeIII GTNAC 1 cut(s) 147
MboII GAAGA 1 cut(s) 235
MluCI AATT 3 cut(s) 179, 257, 309
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 3 cut(s) 80, 119, 271
MseI TTAA 2 cut(s) 120, 356
MslI CAYNNNNRTG 2 cut(s) 246, 319
MspI CCGG 3 cut(s) 93, 152, 212
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 316
NlaIII CATG 2 cut(s) 27, 329
NspI RCATGY 1 cut(s) 27
PciI ACATGT 1 cut(s) 23
PctI GAATGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PscI ACATGT 1 cut(s) 23
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 2 cut(s) 189, 198
RsaNI GTAC 2 cut(s) 188, 197
RseI CAYNNNNRTG 2 cut(s) 246, 319
SaqAI TTAA 2 cut(s) 120, 356
ScaI AGTACT 1 cut(s) 198
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 94
SetI ASST 4 cut(s) 168, 193, 270, 286
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 2 cut(s) 246, 319
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 179, 257, 309
SsiI CCGC 2 cut(s) 48, 176
SspMI CTAG 3 cut(s) 63, 200, 269
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 137
TasI AATT 3 cut(s) 179, 257, 309
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 2 cut(s) 120, 356
Tru9I TTAA 2 cut(s) 120, 356
TspDTI ATGAA 2 cut(s) 44, 303
XapI RAATTY 2 cut(s) 179, 257
XceI RCATGY 1 cut(s) 27
XspI CTAG 3 cut(s) 63, 200, 269
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.