Rmu_sc0004232.1_g000016
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004232.1
OG0000656
Physical Location & Seq
Forward (+)
80764 .. 81255
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004232.1_g000016.1.cds

Sequence Viewer

Length: 492 bp
atgcaagaagagacttatggtctaacaaatgagactctttgcctagttccaaatgaagaaggagttttcttagctccatttattttgttatattctgaaatggagatggtgaaaagcttatccatgctcaaagacacagtacttgaacctgggtgtcctttcaacaatgcttatggtgtgtccatgtatgagtacatgtctgagaaacctgacttgagccaattgtttaataaagctataggccaaagtacgatcctcgattttgaagaggtgttaaaggtttacaaaggttttgaagagctagaagagttgatggatgttggaggaggtgatggaacgacaatttcaaaagtagtatctagatatccacacattcatgggactaacttcgatttgcctaatgttatcgctcaaggaactgctagatatcaaacaggtcaatatataataagtgctacaacatcatgcatgtacaatttctctttcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

4.35

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 247
AfaI GTAC 4 cut(s) 141, 194, 250, 473
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 5 cut(s) 146, 163, 266, 296, 348
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 4 cut(s) 74, 117, 236, 301
AluI AGCT 4 cut(s) 74, 117, 236, 301
Alw26I GTCTC 2 cut(s) 5, 26
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 121, 341
BccI CCATC 3 cut(s) 100, 307, 326
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 5, 26
BfaI CTAG 4 cut(s) 44, 302, 360, 423
BfmI CTRYAG 1 cut(s) 237
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 150
BmeRI GACNNNNNGTC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 150
BpuEI CTTGAG 2 cut(s) 235, 396
BsaJI CCNNGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 5, 26
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 1 cut(s) 252
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 291
BsrGI TGTACA 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 4 cut(s) 3, 261, 291, 300
BstAUI TGTACA 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 70, 201
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 5, 26
BstMBI GATC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 199, 472
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 322
Csp6I GTAC 4 cut(s) 140, 193, 249, 472
CviAII CATG 6 cut(s) 124, 184, 196, 377, 465, 469
CviJI RGCY 6 cut(s) 74, 117, 219, 236, 243, 301
CviKI_1 RGCY 6 cut(s) 74, 117, 219, 236, 243, 301
CviQI GTAC 4 cut(s) 140, 193, 249, 472
DdeI CTNAG 2 cut(s) 70, 201
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DriI GACNNNNNGTC 1 cut(s) 18
Eam1104I CTCTTC 4 cut(s) 3, 261, 291, 300
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 4 cut(s) 3, 261, 291, 300
Eco32I GATATC 2 cut(s) 365, 428
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 2 cut(s) 365, 428
EcoT22I ATGCAT 1 cut(s) 470
FaeI CATG 6 cut(s) 127, 187, 199, 380, 468, 472
FaqI GGGAC 1 cut(s) 394
FatI CATG 6 cut(s) 123, 183, 195, 376, 464, 468
FokI GGATG 1 cut(s) 329
FspBI CTAG 4 cut(s) 44, 302, 360, 423
HaeIII GGCC 1 cut(s) 243
Hin1II CATG 6 cut(s) 127, 187, 199, 380, 468, 472
HindIII AAGCTT 1 cut(s) 115
HinfI GANTC 1 cut(s) 34
HphI GGTGA 2 cut(s) 121, 341
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 97, 202
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 4, 468
HpyF3I CTNAG 2 cut(s) 70, 201
Hsp92II CATG 6 cut(s) 127, 187, 199, 380, 468, 472
Kzo9I GATC 1 cut(s) 252
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 135, 162, 222, 420
MaeI CTAG 4 cut(s) 44, 302, 360, 423
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 5 cut(s) 20, 68, 278, 308, 317
MfeI CAATTG 1 cut(s) 221
MluCI AATT 3 cut(s) 221, 342, 475
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 4 cut(s) 262, 266, 317, 320
Mph1103I ATGCAT 1 cut(s) 470
MseI TTAA 2 cut(s) 228, 275
MslI CAYNNNNRTG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 252
NlaIII CATG 6 cut(s) 127, 187, 199, 380, 468, 472
NsiI ATGCAT 1 cut(s) 470
NspI RCATGY 2 cut(s) 199, 472
PciI ACATGT 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 291
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
RsaI GTAC 4 cut(s) 141, 194, 250, 473
RsaNI GTAC 4 cut(s) 140, 193, 249, 472
RseI CAYNNNNRTG 1 cut(s) 375
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 228, 275
Sau3AI GATC 1 cut(s) 252
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 150
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 214, 411
SmoI CTYRAG 2 cut(s) 214, 411
Sse9I AATT 3 cut(s) 221, 342, 475
SspMI CTAG 4 cut(s) 44, 302, 360, 423
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 258, 390
TasI AATT 3 cut(s) 221, 342, 475
TatI WGTACW 3 cut(s) 139, 192, 471
Tru1I TTAA 2 cut(s) 228, 275
Tru9I TTAA 2 cut(s) 228, 275
TspDTI ATGAA 3 cut(s) 69, 365, 475
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 2 cut(s) 199, 472
XspI CTAG 4 cut(s) 44, 302, 360, 423
ZrmI AGTACT 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.