Rmu_sc0003162.1_g000007
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003162.1
OG0000656
Physical Location & Seq
Forward (+)
21599 .. 23074
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003162.1_g000007.1.cds

Sequence Viewer

Length: 924 bp
atggaaagtcttggaagtttagaaaatcatacttcagcttggggtttggcaaattccatcaccattcaaaggactctgagagctgcagttgagctcaatgtgttcaacatcattgccaaatcaggtcccggagctcacctgacatcaaaagaaattgtttcacaaatccccaacacaaatccaactttcgcaggtgacaatttggagcgaatgctcaaacttttgagtgttcattctcttttgtccacatccgtaagaccaaaccctactgataagacaaagcaagaaacaagttatgggctaacaaaggaagcactttgcctagtgccgaatgaagatggagtttcttttgccccgaatatattgtggggctccgaaatgctcgttgcgaagatcttttacatgctcaagtacaaggtgcttgaaccggagagttctccctttctcaaagcccatggagagagtctttatgactacatgtctaacaagcctgagctgtgccaattgtttgacaaggtgatgggtctaaattcttacctatattttgatcataaggtgtttgaggtttacaaaggtttcgaagaggtgaaggagctgatggatgtaggaggtggtgatggaactgcgattgccaagatagtgtctatgtatcctcacatccatggaatcaacttcaatttgccaagtgttatatctaaagctcctaacttgcaagttgagaataccccggaaatgaagcaagtgttatgtatggacatattcatgatgaccttgttttctggtggtaaggagcgaacaactgctgaatttgatatcctggccaaatccgtaggtttcgttgaagcaaagatcttcccgcttcctcgtgggagtcatgttattgagtttcttaagggcgggagcatgggatcgttggataagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

307

Amino Acids

33.94

Weight (kDa)

5.93

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AciI CCGC 2 cut(s) 857, 897
AclWI GGATC 1 cut(s) 916
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 3 cut(s) 52, 529, 806
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 69
AflII CTTAAG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 5 cut(s) 68, 106, 425, 676, 842
AhdI GACNNNNNGTC 1 cut(s) 478
AjnI CCWGG 1 cut(s) 816
AluBI AGCT 7 cut(s) 38, 83, 94, 134, 496, 595, 701
AluI AGCT 7 cut(s) 38, 83, 94, 134, 496, 595, 701
Alw21I GWGCWC 2 cut(s) 96, 136
AlwI GGATC 1 cut(s) 916
AoxI GGCC 1 cut(s) 819
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 3 cut(s) 52, 529, 806
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 129, 728
AsuHPI GGTGA 6 cut(s) 52, 128, 206, 529, 598, 626
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 821
BanII GRGCYC 3 cut(s) 96, 136, 374
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BauI CACGAG 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 96, 136
BbvI GCAGC 1 cut(s) 70
BccI CCATC 5 cut(s) 65, 332, 514, 592, 611
BciT130I CCWGG 1 cut(s) 818
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 2 cut(s) 129, 728
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 84
BfrI CTTAAG 1 cut(s) 890
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 2 cut(s) 393, 849
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 3 cut(s) 129, 728, 818
Bme18I GGWCC 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 127, 373
BmrFI CCNGG 3 cut(s) 129, 728, 818
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 392
BpuMI CCSGG 2 cut(s) 129, 728
BsaJI CCNNGG 3 cut(s) 454, 661, 726
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 818
BseDI CCNNGG 3 cut(s) 454, 661, 726
BseGI GGATG 3 cut(s) 248, 607, 657
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 68, 483
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 821
BsiHKAI GWGCWC 2 cut(s) 96, 136
BsiSI CCGG 3 cut(s) 129, 428, 728
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 1 cut(s) 821
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 3 cut(s) 96, 136, 374
Bsp143I GATC 4 cut(s) 393, 547, 849, 908
Bsp19I CCATGG 2 cut(s) 454, 661
BspACI CCGC 2 cut(s) 857, 897
BspANI GGCC 1 cut(s) 821
BspCNI CTCAG 2 cut(s) 69, 484
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 127, 373
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 916
BspT104I TTCGAA 1 cut(s) 579
BspTI CTTAAG 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 454, 661, 726
BssMI GATC 4 cut(s) 393, 547, 849, 908
BssSI CACGAG 1 cut(s) 864
BssT1I CCWWGG 2 cut(s) 454, 661
Bst2BI CACGAG 1 cut(s) 864
Bst2UI CCWGG 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 576
BstAFI CTTAAG 1 cut(s) 890
BstBI TTCGAA 1 cut(s) 579
BstDEI CTNAG 2 cut(s) 77, 492
BstDSI CCRYGG 2 cut(s) 454, 661
BstF5I GGATG 3 cut(s) 248, 607, 657
BstKTI GATC 4 cut(s) 396, 550, 852, 911
BstMBI GATC 4 cut(s) 393, 547, 849, 908
BstNI CCWGG 1 cut(s) 818
BstNSI RCATGY 2 cut(s) 406, 481
BstSCI CCNGG 3 cut(s) 127, 726, 816
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 2 cut(s) 393, 849
BstYI RGATCY 2 cut(s) 393, 849
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 1 cut(s) 821
BtgI CCRYGG 2 cut(s) 454, 661
BtsCI GGATG 3 cut(s) 248, 607, 657
BveI ACCTGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 762
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 412
CviAII CATG 7 cut(s) 403, 455, 478, 662, 763, 875, 904
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 77, 492
DpnI GATC 4 cut(s) 395, 549, 851, 910
DpnII GATC 4 cut(s) 393, 547, 849, 908
DriI GACNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 1 cut(s) 576
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 576
Ecl136II GAGCTC 2 cut(s) 94, 134
Eco130I CCWWGG 2 cut(s) 454, 661
Eco24I GRGCYC 3 cut(s) 96, 136, 374
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 2 cut(s) 94, 134
Eco57I CTGAAG 1 cut(s) 18
EcoICRI GAGCTC 2 cut(s) 94, 134
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 816
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 454, 661
EcoT38I GRGCYC 3 cut(s) 96, 136, 374
ErhI CCWWGG 2 cut(s) 454, 661
FaeI CATG 7 cut(s) 406, 458, 481, 665, 766, 878, 907
FaqI GGGAC 1 cut(s) 111
FatI CATG 7 cut(s) 402, 454, 477, 661, 762, 874, 903
FauI CCCGC 2 cut(s) 864, 890
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 235, 614, 644
FriOI GRGCYC 3 cut(s) 96, 136, 374
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 821
HapII CCGG 3 cut(s) 129, 428, 728
Hin1II CATG 7 cut(s) 406, 458, 481, 665, 766, 878, 907
HinfI GANTC 4 cut(s) 73, 463, 666, 871
HpaII CCGG 3 cut(s) 129, 428, 728
HphI GGTGA 6 cut(s) 52, 128, 206, 529, 598, 626
Hpy166II GTNNAC 2 cut(s) 246, 568
Hpy188I TCNGA 2 cut(s) 78, 376
Hpy188III TCNNGA 1 cut(s) 763
Hpy8I GTNNAC 2 cut(s) 246, 568
HpyAV CCTTC 1 cut(s) 583
HpyCH4V TGCA 2 cut(s) 86, 712
HpyF3I CTNAG 2 cut(s) 77, 492
Hsp92II CATG 7 cut(s) 406, 458, 481, 665, 766, 878, 907
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 4 cut(s) 393, 547, 849, 908
LmnI GCTCC 7 cut(s) 131, 205, 377, 592, 706, 790, 900
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 194
MalI GATC 4 cut(s) 395, 549, 851, 910
MboI GATC 4 cut(s) 393, 547, 849, 908
MboII GAAGA 4 cut(s) 347, 403, 593, 844
MfeI CAATTG 1 cut(s) 503
MflI RGATCY 2 cut(s) 393, 849
MhlI GDGCHC 3 cut(s) 96, 136, 374
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 7 cut(s) 52, 153, 199, 503, 529, 676, 806
MluNI TGGCCA 1 cut(s) 821
MlyI GAGTC 3 cut(s) 67, 472, 880
MmeI TCCRAC 2 cut(s) 206, 894
MnlI CCTC 5 cut(s) 556, 577, 602, 663, 873
Mox20I TGGCCA 1 cut(s) 821
MscI TGGCCA 1 cut(s) 821
MseI TTAA 1 cut(s) 891
MslI CAYNNNNRTG 2 cut(s) 660, 761
Msp20I TGGCCA 1 cut(s) 821
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 3 cut(s) 129, 428, 728
MspR9I CCNGG 3 cut(s) 129, 728, 818
MunI CAATTG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 818
NciI CCSGG 2 cut(s) 129, 728
NcoI CCATGG 2 cut(s) 454, 661
NdeII GATC 4 cut(s) 393, 547, 849, 908
NlaIII CATG 7 cut(s) 406, 458, 481, 665, 766, 878, 907
NlaIV GGNNCC 2 cut(s) 127, 373
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 2 cut(s) 406, 481
NspV TTCGAA 1 cut(s) 579
PagI TCATGA 1 cut(s) 762
PaqCI CACCTGC 1 cut(s) 182
PciI ACATGT 1 cut(s) 477
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 666
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 3 cut(s) 67, 471, 879
PpsI GAGTC 3 cut(s) 67, 471, 879
PpuMI RGGWCCY 1 cut(s) 125
PscI ACATGT 1 cut(s) 477
Psp124BI GAGCTC 2 cut(s) 96, 136
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 816
PspGI CCWGG 1 cut(s) 816
PspN4I GGNNCC 2 cut(s) 127, 373
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 2 cut(s) 393, 849
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 2 cut(s) 660, 761
SacI GAGCTC 2 cut(s) 96, 136
SaqAI TTAA 1 cut(s) 891
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 4 cut(s) 393, 547, 849, 908
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 3 cut(s) 67, 472, 880
ScrFI CCNGG 3 cut(s) 129, 728, 818
SduI GDGCHC 3 cut(s) 96, 136, 374
SfcI CTRYAG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 660, 761
SmlI CTYRAG 2 cut(s) 407, 890
SmoI CTYRAG 2 cut(s) 407, 890
Sse9I AATT 7 cut(s) 52, 153, 199, 503, 529, 676, 806
SsiI CCGC 2 cut(s) 857, 897
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 2 cut(s) 96, 136
StyD4I CCNGG 3 cut(s) 127, 726, 816
StyI CCWWGG 2 cut(s) 454, 661
TaqI TCGA 1 cut(s) 579
TasI AATT 7 cut(s) 52, 153, 199, 503, 529, 676, 806
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 1 cut(s) 666
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 221, 348, 749, 751
TspGWI ACGGA 2 cut(s) 241, 817
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 3 cut(s) 52, 529, 806
XceI RCATGY 2 cut(s) 406, 481
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.