Rorug05G0022400
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000656
Physical Location & Seq
Forward (+)
1436226 .. 1437304
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0022400.1

Sequence Viewer

Length: 336 bp
ATGAAGGTGGTTGCTGCTTGTATGCTGGCTGCTTTGGGAGGCAACGCCAGTCCTTCGGCCGATGATGTGAAGAAAATTCTCGGATCAGTCGGAGCTGAAGCCGATGACAGTAGGATCGAGTTGCTCTTGTCCGAACTCAAAGGAAAAGATATCACCGAGCTAGTTGCATCTGGAAGAGAGAAGTTGGCATCGGTGCCTTCCGGTGGCTCAGCTGCCGTTGCATCACCTGCAGCTGCTACTACCGCTGCTGCTGCTGCTGAGGAGAAGCCTGAAGAGAAGGCTGAAGAGGAGGAGGAGGACGACGAATTTATATCGAATATATTTGACGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

111

Amino Acids

11.29

Weight (kDa)

4.18

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 103 7.3e-21 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 193
AciI CCGC 1 cut(s) 243
AclWI GGATC 2 cut(s) 91, 122
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 2 cut(s) 75, 305
AcuI CTGAAG 3 cut(s) 117, 291, 303
AfiI CCNNNNNNNGG 1 cut(s) 203
AluBI AGCT 4 cut(s) 95, 160, 212, 233
AluI AGCT 4 cut(s) 95, 160, 212, 233
AlwI GGATC 2 cut(s) 91, 122
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 9 cut(s) 14, 29, 212, 230, 233, 245, 248, 251, 254
ApoI RAATTY 2 cut(s) 75, 305
AsuHPI GGTGA 2 cut(s) 145, 216
BanI GGYRCC 1 cut(s) 193
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 8 cut(s) 16, 199, 220, 232, 235, 238, 241, 242
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BfaI CTAG 2 cut(s) 161, 334
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 9 cut(s) 15, 30, 213, 231, 234, 246, 249, 252, 255
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 9 cut(s) 16, 31, 214, 232, 235, 247, 250, 253, 256
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 3 cut(s) 176, 197, 230
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 222, 249
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 4 cut(s) 275, 302, 305, 308
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 8 cut(s) 16, 199, 220, 232, 235, 238, 241, 242
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 83, 114
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 221, 250
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 2 cut(s) 91, 122
BspT107I GGYRCC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 48
BssMI GATC 2 cut(s) 83, 114
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 3 cut(s) 169, 267, 279
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 208, 258
BstKTI GATC 2 cut(s) 86, 117
BstMBI GATC 2 cut(s) 83, 114
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 5 cut(s) 218, 227, 242, 251, 254
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 8 cut(s) 16, 199, 220, 232, 235, 238, 241, 242
BstZI CGGCCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 59
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 208, 258
DpnI GATC 2 cut(s) 85, 116
DpnII GATC 2 cut(s) 83, 114
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 3 cut(s) 169, 267, 279
EarI CTCTTC 3 cut(s) 169, 267, 279
EclXI CGGCCG 1 cut(s) 57
Eco32I GATATC 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 57
Eco57I CTGAAG 3 cut(s) 117, 291, 303
EcoRV GATATC 1 cut(s) 151
FaiI YATR 3 cut(s) 23, 311, 320
Fnu4HI GCNGC 9 cut(s) 15, 30, 213, 231, 234, 246, 249, 252, 255
Fsp4HI GCNGC 9 cut(s) 15, 30, 213, 231, 234, 246, 249, 252, 255
FspBI CTAG 2 cut(s) 161, 334
GluI GCNGC 9 cut(s) 15, 30, 213, 231, 234, 246, 249, 252, 255
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 201
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 145, 216
Hpy188I TCNGA 3 cut(s) 83, 92, 133
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 3 cut(s) 63, 207, 271
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 167, 221, 230
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 227, 242, 251, 254
HpyF3I CTNAG 2 cut(s) 208, 258
Kzo9I GATC 2 cut(s) 83, 114
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 6 cut(s) 11, 61, 156, 214, 240, 282
Lsp1109I GCAGC 8 cut(s) 16, 199, 220, 232, 235, 238, 241, 242
LweI GCATC 3 cut(s) 176, 197, 230
MaeI CTAG 2 cut(s) 161, 334
MalI GATC 2 cut(s) 85, 116
MboI GATC 2 cut(s) 83, 114
MboII GAAGA 4 cut(s) 82, 186, 284, 296
MluCI AATT 2 cut(s) 75, 305
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 7 cut(s) 32, 253, 280, 283, 286, 289, 322
MspA1I CMGCKG 3 cut(s) 212, 233, 245
MspI CCGG 1 cut(s) 201
MwoI GCNNNNNNNGC 5 cut(s) 218, 227, 242, 251, 254
NdeII GATC 2 cut(s) 83, 114
NlaIV GGNNCC 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 235
PkrI GCNGC 9 cut(s) 16, 31, 214, 232, 235, 247, 250, 253, 256
PspN4I GGNNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 2 cut(s) 212, 233
SatI GCNGC 9 cut(s) 15, 30, 213, 231, 234, 246, 249, 252, 255
Sau3AI GATC 2 cut(s) 83, 114
SetI ASST 6 cut(s) 9, 97, 162, 214, 229, 235
SfaNI GCATC 3 cut(s) 176, 197, 230
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 2 cut(s) 75, 305
SsiI CCGC 1 cut(s) 243
SspMI CTAG 2 cut(s) 161, 334
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 117, 314
TasI AATT 2 cut(s) 75, 305
TseI GCWGC 9 cut(s) 14, 29, 212, 230, 233, 245, 248, 251, 254
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 75, 305
XspI CTAG 2 cut(s) 161, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.