Rh5BG111300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
10421736 .. 10423596
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG111300.1

Sequence Viewer

Length: 1107 bp
ATGGAAAGTCATGGAAGTTTAGAAAATCATACTTCAGCTTGGGGTTTGGCAAATTCCATCACCATTCAAATGACTCTGAGAGCTGCAGTTGAGCTTAATGTGTTCAACATCATTGCCAAATCAGGTCCTGGAGCTCATCTGACATCAAAAGAAATTGTTTCACAAATTCCCAACACAAATCCAACTTTAGCATGTGAGAATTTGGAGCGAATGCTCAAACTTTTGAGTGTTCATTCTCTTTTATCCACATCTTTAAGACCAAACCCTATTGATAAGACAAAGCAAGAAACAAGTTATGGGCTAACAAAGGAAGCACTATGCCTAGTCCCGAATCAAGATGGAGTTTCTTTTGCTCCGGTTGTTGTGTTGGGCTCCGAAATGCTCGTTGCGAAGAGCTTCTACATGCTCAAGTACAAGGTGCTTGAACCGGAGAGTTCTCCCTTTCTCAAAGCCCATGGAGAGAGTTTTTATGACTACATGTCTAACAAGCCTGAGCTGTGCCAACTGTTTGACAAGGTGATGGAAGTAAATTCTTACCTATATTTTGATCATAAGGTGTTTGAGGTTTACAAAGGTTTCGAAGAGGTGAAGGAGCTGATGGATGTAGGAGGTGGTGATGGAACTGCGATTGCGAAGATAGTGTCTATGTATCCTCACATCCATGGAATCAACTTCGATTTGCCAAGTGTTATTTCTAAAGCTCCTAGCTTGCAAGGTGTGGAGCATGTAAGTGGAGATATGTTTGAGTTAATACCAAAGACGCAGTCAATCATGTTGATGTGGGTACTCCATAATTGGGATGATGAACACTGTAAGAAGATATTGAGAAACTGTTGGGAGGCAATACCGGATTATGGGAAGGTAATTGTTGTTGAGCACAATGTAATGCCTGAACTAGTTGAGAATACCCCAAAAATGAAGCAAGTGTTATGTATGGACATATTCATGATGACTTTGTTGCCTAGTGGTAAGGAGCGAGCAACTGCTGAATTTGATATCCTAGCCAAATCCGTAGGTTTCGTTGAAACAAAGATCTTCCCGCTTCCTCGTGGGAGTCATGTTATTGAGTTTCTGAAGGGCGGGAGCGTGGGATCGTTTGATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

368

Amino Acids

41.08

Weight (kDa)

5.73

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 14 - 109 8.7e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 133 - 340 1e-49 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 1040, 1080
AclWI GGATC 1 cut(s) 1099
AcsI RAATTY 5 cut(s) 52, 165, 199, 529, 989
AcuI CTGAAG 2 cut(s) 18, 1094
AfaI GTAC 2 cut(s) 413, 786
AfiI CCNNNNNNNGG 2 cut(s) 796, 854
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 4 cut(s) 68, 106, 425, 1025
AhdI GACNNNNNGTC 1 cut(s) 478
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 676, 708
AluBI AGCT 9 cut(s) 38, 83, 94, 134, 396, 496, 595, 701, 708
AluI AGCT 9 cut(s) 38, 83, 94, 134, 396, 496, 595, 701, 708
Alw21I GWGCWC 2 cut(s) 136, 879
AlwI GGATC 1 cut(s) 1099
AlwNI CAGNNNCTG 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 5 cut(s) 52, 165, 199, 529, 989
ArsI GACNNNNNNTTYG 4 cut(s) 626, 658, 749, 781
Asp700I GAANNNNTTC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 4 cut(s) 52, 529, 598, 626
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 136, 374
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BauI CACGAG 1 cut(s) 1047
Bbv12I GWGCWC 2 cut(s) 136, 879
BbvI GCAGC 1 cut(s) 70
BccI CCATC 5 cut(s) 65, 332, 514, 592, 611
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 547
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 5 cut(s) 323, 705, 896, 963, 1001
BfmI CTRYAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 1 cut(s) 1032
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 454, 661
BsaWI WCCGGW 3 cut(s) 355, 427, 847
Bsc4I CCNNNNNNNGG 2 cut(s) 796, 854
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 454, 661
BseGI GGATG 3 cut(s) 607, 657, 805
BseLI CCNNNNNNNGG 2 cut(s) 796, 854
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 68, 483
BseXI GCAGC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 136, 879
BsiSI CCGG 3 cut(s) 356, 428, 848
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 796, 854
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 3 cut(s) 136, 374, 879
Bsp143I GATC 3 cut(s) 547, 1032, 1091
Bsp19I CCATGG 2 cut(s) 454, 661
BspACI CCGC 2 cut(s) 1040, 1080
BspCNI CTCAG 2 cut(s) 69, 484
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 1099
BspQI GCTCTTC 1 cut(s) 386
BspT104I TTCGAA 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 454, 661
BssMI GATC 3 cut(s) 547, 1032, 1091
BssSI CACGAG 1 cut(s) 1047
BssT1I CCWWGG 2 cut(s) 454, 661
Bst2BI CACGAG 1 cut(s) 1047
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 3 cut(s) 507, 812, 833
Bst6I CTCTTC 2 cut(s) 386, 576
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 710, 978
BstDEI CTNAG 2 cut(s) 77, 492
BstDSI CCRYGG 2 cut(s) 454, 661
BstF5I GGATG 3 cut(s) 607, 657, 805
BstKTI GATC 3 cut(s) 550, 1035, 1094
BstMBI GATC 3 cut(s) 547, 1032, 1091
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 4 cut(s) 195, 406, 481, 728
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 1032
BstYI RGATCY 1 cut(s) 1032
BsuI GTATCC 1 cut(s) 660
BtgI CCRYGG 2 cut(s) 454, 661
BtsCI GGATG 3 cut(s) 607, 657, 805
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 2 cut(s) 710, 978
CaiI CAGNNNCTG 1 cut(s) 128
CciI TCATGA 1 cut(s) 945
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 769
Csp6I GTAC 2 cut(s) 412, 785
CviQI GTAC 2 cut(s) 412, 785
DdeI CTNAG 2 cut(s) 77, 492
DpnI GATC 3 cut(s) 549, 1034, 1093
DpnII GATC 3 cut(s) 547, 1032, 1091
DriI GACNNNNNGTC 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 386, 576
Eam1105I GACNNNNNGTC 1 cut(s) 478
EarI CTCTTC 2 cut(s) 386, 576
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 454, 661
Eco24I GRGCYC 2 cut(s) 136, 374
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 18, 1094
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 2 cut(s) 454, 661
EcoT38I GRGCYC 2 cut(s) 136, 374
ErhI CCWWGG 2 cut(s) 454, 661
FaqI GGGAC 1 cut(s) 311
FauI CCCGC 2 cut(s) 1047, 1073
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 614, 644, 812
FriOI GRGCYC 2 cut(s) 136, 374
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 5 cut(s) 323, 705, 896, 963, 1001
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 150
HapII CCGG 3 cut(s) 356, 428, 848
HgaI GACGC 1 cut(s) 769
HinfI GANTC 4 cut(s) 73, 331, 666, 1054
HpaII CCGG 3 cut(s) 356, 428, 848
HphI GGTGA 4 cut(s) 52, 529, 598, 626
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 4 cut(s) 78, 141, 376, 1074
Hpy188III TCNNGA 3 cut(s) 328, 335, 946
Hpy8I GTNNAC 1 cut(s) 568
HpyAV CCTTC 3 cut(s) 583, 853, 1069
HpyCH4III ACNGT 3 cut(s) 507, 812, 833
HpyCH4V TGCA 2 cut(s) 86, 712
HpyF3I CTNAG 2 cut(s) 77, 492
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 547, 1032, 1091
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 9 cut(s) 131, 205, 358, 377, 592, 706, 721, 973, 1083
LpnPI CCDG 8 cut(s) 108, 114, 141, 369, 441, 504, 861, 903
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 5 cut(s) 323, 705, 896, 963, 1001
MalI GATC 3 cut(s) 549, 1034, 1093
MboI GATC 3 cut(s) 547, 1032, 1091
MboII GAAGA 5 cut(s) 403, 593, 646, 829, 1027
MflI RGATCY 1 cut(s) 1032
MhlI GDGCHC 3 cut(s) 136, 374, 879
MluCI AATT 8 cut(s) 52, 153, 165, 199, 529, 793, 864, 989
MlyI GAGTC 2 cut(s) 67, 1063
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 6 cut(s) 556, 577, 602, 663, 832, 1056
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 3 cut(s) 96, 254, 749
MslI CAYNNNNRTG 5 cut(s) 68, 660, 729, 776, 944
MspI CCGG 3 cut(s) 356, 428, 848
MspR9I CCNGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 129
NcoI CCATGG 2 cut(s) 454, 661
NdeII GATC 3 cut(s) 547, 1032, 1091
NlaIV GGNNCC 1 cut(s) 373
NspI RCATGY 4 cut(s) 195, 406, 481, 728
NspV TTCGAA 1 cut(s) 579
PagI TCATGA 1 cut(s) 945
PciI ACATGT 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 386
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 331, 666
PflFI GACNNNGTC 1 cut(s) 763
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 2 cut(s) 67, 1062
PpsI GAGTC 2 cut(s) 67, 1062
PpuMI RGGWCCY 1 cut(s) 125
PscI ACATGT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 1032
PsyI GACNNNGTC 1 cut(s) 763
RsaI GTAC 2 cut(s) 413, 786
RsaNI GTAC 2 cut(s) 412, 785
RseI CAYNNNNRTG 5 cut(s) 68, 660, 729, 776, 944
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 96, 254, 749
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 547, 1032, 1091
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 2 cut(s) 67, 1063
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 3 cut(s) 136, 374, 879
SfcI CTRYAG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 5 cut(s) 68, 660, 729, 776, 944
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SpeI ACTAGT 1 cut(s) 895
Sse9I AATT 8 cut(s) 52, 153, 165, 199, 529, 793, 864, 989
SsiI CCGC 2 cut(s) 1040, 1080
SspMI CTAG 5 cut(s) 323, 705, 896, 963, 1001
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 2 cut(s) 454, 661
TaaI ACNGT 3 cut(s) 507, 812, 833
TaqI TCGA 2 cut(s) 579, 675
TasI AATT 8 cut(s) 52, 153, 165, 199, 529, 793, 864, 989
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 2 cut(s) 331, 666
Tru1I TTAA 3 cut(s) 96, 254, 749
Tru9I TTAA 3 cut(s) 96, 254, 749
TscAI CASTG 1 cut(s) 815
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 4 cut(s) 221, 819, 932, 934
TspGWI ACGGA 1 cut(s) 1000
TspRI CASTG 1 cut(s) 815
Tth111I GACNNNGTC 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 5 cut(s) 52, 165, 199, 529, 989
XceI RCATGY 4 cut(s) 195, 406, 481, 728
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 5 cut(s) 323, 705, 896, 963, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.