Rmu_sc0004232.1_g000017
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004232.1
Physical Location & Seq
Forward (+)
91051 .. 91362
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004232.1_g000017.1.cds

Sequence Viewer

Length: 312 bp
atgccgtgggtacttcataattgggacgatgatctatgtaagaaaatattgaagcgctgttgggaggcattaccaaaaactgggaaggtaatagttgtggaacttgcaatacctgaaatactagagaaaaccgaagagttaaagaaaatagtggcattagacgtggtcatgatggctactcacggtggtagagaacgaacaactgctgagtttgacgacctatcaaaagctgcaggctttgttgaaacaaagattttttcgatttcaaatgggtgttatgttatggagtttcacaaagttgaaacatattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

5.59

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 80
AfaI GTAC 1 cut(s) 12
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 4 cut(s) 52, 245, 267, 302
AjiI CACGTC 1 cut(s) 163
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 166
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 58
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 5
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 5
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 217
BtgI CCRYGG 1 cut(s) 5
BtrI CACGTC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 235
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 169
CviJI RGCY 3 cut(s) 176, 230, 237
CviKI_1 RGCY 3 cut(s) 176, 230, 237
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco47III AGCGCT 1 cut(s) 56
FaeI CATG 1 cut(s) 172
FaiI YATR 6 cut(s) 18, 37, 170, 279, 284, 307
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 58
HhaI GCGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 107, 233
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 3 cut(s) 66, 126, 219
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 146
MluCI AATT 1 cut(s) 19
MnlI CCTC 1 cut(s) 58
MseI TTAA 1 cut(s) 140
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 172
PagI TCATGA 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 232
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
PstI CTGCAG 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 31
SetI ASST 5 cut(s) 90, 115, 165, 222, 232
SfcI CTRYAG 1 cut(s) 231
SgeI CNNG 9 cut(s) 18, 93, 116, 125, 134, 175, 181, 194, 246
Sse9I AATT 1 cut(s) 19
SspI AATATT 1 cut(s) 48
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 260
TasI AATT 1 cut(s) 19
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 5
Tth111I GACNNNGTC 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 80
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.