Rmu_sc0008669.1_g000001
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008669.1
OG0000656
Physical Location & Seq
Reverse (-)
1425 .. 3297
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008669.1_g000001.1.cds

Sequence Viewer

Length: 471 bp
atgattcagtccgtcaaatcccagctaaattctgcagctgacggtgaaaaagagttttctgggctgaggagcatggtgaatgatgaacacctggggggagctcatctccgggaccttccaataccaaagtttttggccattttgtcagcatgggattttctaataatgggggcaaactactttgaagctactgtcaaatggttgccaaagctattcaggaacatggtaatagttgttgagccatttgtaatgcctgaactagttgaggagaccccagaaatgaagcgcatactttactatgacgtaatcatgatgaccttgtttcctggtggtaaggagcgaacaaccgctgaattggatatcctggccaaatccgtaggtttcgttgaaacaaagatcttcccgcttcctcgtgggagtcatgttattgagtttcttaagggcgggagcgtgggattgttggataagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

156

Amino Acids

17.52

Weight (kDa)

5.64

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 348, 404, 444
AcoI YGGCCR 2 cut(s) 135, 366
AcsI RAATTY 1 cut(s) 28
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 2 cut(s) 185, 389
AhlI ACTAGT 1 cut(s) 259
AjnI CCWGG 3 cut(s) 90, 325, 363
AluBI AGCT 5 cut(s) 25, 38, 101, 188, 211
AluI AGCT 5 cut(s) 25, 38, 101, 188, 211
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 2 cut(s) 135, 366
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 56, 88
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 2 cut(s) 137, 368
BanII GRGCYC 1 cut(s) 103
BauI CACGAG 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 47
BciT130I CCWGG 3 cut(s) 92, 327, 365
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 259
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 437
BglII AGATCT 1 cut(s) 396
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 4 cut(s) 92, 110, 327, 365
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 113
BmrFI CCNGG 4 cut(s) 92, 110, 327, 365
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu10I CCTNAGC 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 91
BseBI CCWGG 3 cut(s) 92, 327, 365
BseDI CCNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 82, 281
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 21
BshFI GGCC 2 cut(s) 137, 368
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 2 cut(s) 137, 368
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 396
BspACI CCGC 3 cut(s) 348, 404, 444
BspANI GGCC 2 cut(s) 137, 368
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 113
BspMAI CTGCAG 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 396
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst2UI CCWGG 3 cut(s) 92, 327, 365
Bst4CI ACNGT 2 cut(s) 44, 193
BstAFI CTTAAG 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 1 cut(s) 399
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 396
BstNI CCWGG 3 cut(s) 92, 327, 365
BstSCI CCNGG 4 cut(s) 90, 108, 325, 363
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 2 cut(s) 137, 368
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 112
CviAII CATG 5 cut(s) 73, 150, 223, 310, 422
CviJI RGCY 9 cut(s) 25, 38, 64, 101, 137, 188, 211, 241, 368
CviKI_1 RGCY 9 cut(s) 25, 38, 64, 101, 137, 188, 211, 241, 368
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
EaeI YGGCCR 2 cut(s) 135, 366
Ecl136II GAGCTC 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 90, 325, 363
EcoRV GATATC 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 5 cut(s) 76, 153, 226, 313, 425
FaiI YATR 7 cut(s) 74, 151, 224, 290, 300, 311, 423
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 72, 149, 222, 309, 421
FauI CCCGC 2 cut(s) 411, 437
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 25
HaeIII GGCC 2 cut(s) 137, 368
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 288
Hin1II CATG 5 cut(s) 76, 153, 226, 313, 425
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 2 cut(s) 4, 418
HpaII CCGG 1 cut(s) 109
HphI GGTGA 2 cut(s) 56, 88
Hpy188III TCNNGA 2 cut(s) 217, 310
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 44, 193
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 5 cut(s) 76, 153, 226, 313, 425
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 396
LmnI GCTCC 4 cut(s) 69, 98, 337, 447
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 303
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 1 cut(s) 391
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 103
MlsI TGGCCA 2 cut(s) 137, 368
MluCI AATT 2 cut(s) 28, 353
MluNI TGGCCA 2 cut(s) 137, 368
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 3 cut(s) 60, 259, 420
Mox20I TGGCCA 2 cut(s) 137, 368
MscI TGGCCA 2 cut(s) 137, 368
MseI TTAA 1 cut(s) 438
Msp20I TGGCCA 2 cut(s) 137, 368
MspA1I CMGCKG 2 cut(s) 38, 350
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 4 cut(s) 92, 110, 327, 365
MvaI CCWGG 3 cut(s) 92, 327, 365
NciI CCSGG 1 cut(s) 110
NdeII GATC 1 cut(s) 396
NlaIII CATG 5 cut(s) 76, 153, 226, 313, 425
NlaIV GGNNCC 1 cut(s) 113
PagI TCATGA 1 cut(s) 309
PfeI GAWTC 1 cut(s) 4
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PpuMI RGGWCCY 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 90, 325, 363
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 3 cut(s) 90, 325, 363
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 112
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 4 cut(s) 92, 110, 327, 365
SduI GDGCHC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 259
Sse9I AATT 2 cut(s) 28, 353
SsiI CCGC 3 cut(s) 348, 404, 444
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 103
StyD4I CCNGG 4 cut(s) 90, 108, 325, 363
TaaI ACNGT 2 cut(s) 44, 193
TaiI ACGT 1 cut(s) 306
TasI AATT 2 cut(s) 28, 353
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 99, 296
TspGWI ACGGA 1 cut(s) 364
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 28
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.