Rroxscaffold_1G00035370
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
51485437 .. 51486477
1041 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00035370.1

Sequence Viewer

Length: 246 bp
ATGTCTGTTTTCTCACCGTCTCTCACGATTGGTCTTCGCCGAAAGGTTCACGTTACAGCTCAGTGGAACGAAGGAAACTCTAGAGCTGCAGTAGAGCTCAATGTCTTCTCAGGGCGTGGAGTTCATCTCACATCAGAAGAAATCAAAAATCCGAGTGCAGCAATTGCGACTTTGGAGCGAATACTAAAACTGCTCAGCGTCAACTCCATCCCTCCTTTCCGCATCTCTAAGACCAAGTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.9

Weight (kDa)

10.6

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AluBI AGCT 3 cut(s) 59, 86, 97
AluI AGCT 3 cut(s) 59, 86, 97
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 86, 158
AsuHPI GGTGA 1 cut(s) 6
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 26, 97
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 73, 170
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 87, 159
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 2 cut(s) 88, 160
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 2 cut(s) 26, 97
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu1102I GCTNAGC 1 cut(s) 194
BseGI GGATG 1 cut(s) 207
BseMII CTCAG 3 cut(s) 74, 123, 208
BseXI GCAGC 2 cut(s) 73, 170
BsgI GTGCAG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 194
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 3 cut(s) 73, 122, 207
BspMAI CTGCAG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDEI CTNAG 4 cut(s) 60, 109, 194, 228
BstF5I GGATG 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 73, 170
BstV2I GAAGAC 2 cut(s) 26, 97
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 68
CseI GACGC 1 cut(s) 187
CviJI RGCY 3 cut(s) 59, 86, 97
CviKI_1 RGCY 3 cut(s) 59, 86, 97
DdeI CTNAG 4 cut(s) 60, 109, 194, 228
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 87, 159
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 87, 159
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 87, 159
HgaI GACGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 49, 202
Hpy188I TCNGA 2 cut(s) 136, 153
Hpy188III TCNNGA 2 cut(s) 25, 81
Hpy8I GTNNAC 2 cut(s) 49, 202
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 89, 158, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 4 cut(s) 60, 109, 194, 228
HpySE526I ACGT 1 cut(s) 51
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 1 cut(s) 96
Lsp1109I GCAGC 2 cut(s) 73, 170
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 3 cut(s) 26, 97, 149
MfeI CAATTG 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 162
MnlI CCTC 1 cut(s) 222
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 88, 160
Psp124BI GAGCTC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 91
SacI GAGCTC 1 cut(s) 99
SatI GCNGC 2 cut(s) 87, 159
SduI GDGCHC 1 cut(s) 99
SetI ASST 5 cut(s) 48, 54, 61, 88, 99
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 87
SgeI CNNG 6 cut(s) 37, 62, 93, 123, 128, 165
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 99
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 1 cut(s) 54
TasI AATT 1 cut(s) 162
TscAI CASTG 1 cut(s) 68
TseI GCWGC 2 cut(s) 86, 158
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 1 cut(s) 68
XbaI TCTAGA 1 cut(s) 80
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.