Rh5DG110100
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000656
Physical Location & Seq
Forward (+)
10009835 .. 10010356
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG110100.1

Sequence Viewer

Length: 522 bp
ATGGAAAGTCATGGAAGTTTAGAAAATCATACTTCAGCTTGGGGTTTGGCAAATTCCATCACCATTCAAATGACTCTGAGAGCTGCAGTTGAGGTCAATGTGTTCAACATCATTGCCAAATCAGGTGCCGGAGCTCGTCTGACATCAAAAGAAATTATTTCACCAATTCCCAATACAAATCCAACTTTAGCATGTGAGAATTTGGAGCGAATCCTCAAACTTTTGCGTGTTCATTCTCTTTTATCCACATCTTTAAGACCAAACCCTATTGATAAGACAAAGCAAGAAACAAGTTATGGGCTAACAAAGGAAGCACTATGCCTAGTCCCGAATGAATGGAGTTTCTTTTGCTCCGGTTGTTGTGTTGGGCTCCGAAATGCTCGTTGCGAAGAGCTTCTACATATATGCTCAAGTACAAGGTGCTTGAACCCGAGAGTTCTCCCTTTCTCAAAGCCCATGGAGAGAGTTTTTATGACTACATGTCTAACAAGCCTGAGCTGTGCCAACTGTTTGACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

173

Amino Acids

19.07

Weight (kDa)

8.7

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 14 - 109 3.1e-09 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 52, 199
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 415
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 68, 106, 427
AhdI GACNNNNNGTC 1 cut(s) 480
AluBI AGCT 5 cut(s) 38, 83, 134, 394, 498
AluI AGCT 5 cut(s) 38, 83, 134, 394, 498
Alw21I GWGCWC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 430
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 52, 199
Asp700I GAANNNNTTC 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 52, 153
AvaI CYCGRG 1 cut(s) 430
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 136, 372
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 65
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmeRI GACNNNNNGTC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 127, 371
Bpu10I CCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 456
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 68, 485
BseXI GCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 430
BsiSI CCGG 2 cut(s) 129, 354
BslFI GGGAC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 136, 372
Bsp19I CCATGG 1 cut(s) 456
BspCNI CTCAG 2 cut(s) 69, 486
BspLI GGNNCC 2 cut(s) 127, 371
BspMAI CTGCAG 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 77, 494
BstDSI CCRYGG 1 cut(s) 456
BstNSI RCATGY 2 cut(s) 195, 483
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 456
Csp6I GTAC 1 cut(s) 414
CviAII CATG 4 cut(s) 11, 192, 457, 480
CviJI RGCY 9 cut(s) 38, 83, 134, 301, 370, 394, 454, 492, 498
CviKI_1 RGCY 9 cut(s) 38, 83, 134, 301, 370, 394, 454, 492, 498
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 77, 494
DriI GACNNNNNGTC 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 384
Eam1105I GACNNNNNGTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 136, 372
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 136, 372
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 4 cut(s) 14, 195, 460, 483
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 10, 191, 456, 479
Fnu4HI GCNGC 1 cut(s) 84
FriOI GRGCYC 2 cut(s) 136, 372
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 84
HapII CCGG 2 cut(s) 129, 354
Hin1II CATG 4 cut(s) 14, 195, 460, 483
HinfI GANTC 2 cut(s) 73, 210
HpaII CCGG 2 cut(s) 129, 354
HphI GGTGA 2 cut(s) 52, 153
Hpy188I TCNGA 3 cut(s) 78, 141, 374
Hpy188III TCNNGA 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 77, 494
Hsp92II CATG 4 cut(s) 14, 195, 460, 483
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 4 cut(s) 131, 205, 356, 375
LpnPI CCDG 4 cut(s) 108, 142, 367, 506
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 323
MboII GAAGA 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 136, 372
MluCI AATT 4 cut(s) 52, 153, 165, 199
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 2 cut(s) 85, 224
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 2 cut(s) 129, 354
NcoI CCATGG 1 cut(s) 456
NlaIII CATG 4 cut(s) 14, 195, 460, 483
NlaIV GGNNCC 2 cut(s) 127, 371
NspI RCATGY 2 cut(s) 195, 483
PciI ACATGT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 127, 371
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 84
SchI GAGTC 1 cut(s) 67
SduI GDGCHC 2 cut(s) 136, 372
SetI ASST 8 cut(s) 40, 85, 96, 127, 136, 396, 422, 500
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 4 cut(s) 52, 153, 165, 199
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 1 cut(s) 136
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 509
TasI AATT 4 cut(s) 52, 153, 165, 199
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 221, 348
XapI RAATTY 2 cut(s) 52, 199
XceI RCATGY 2 cut(s) 195, 483
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.