FvH4_3g13160
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000656
Physical Location & Seq
Reverse (-)
7855812 .. 7856857
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13160.t1

Sequence Viewer

Length: 453 bp
ATGGATGTAGGAGGGGGGGATGGAAGTGCCATTGCCAAAATAGTGTCACTATATCCTCATATTCAGGCTATCAACTTCAATTTGTCCAGTGTGGTTGCTCGTGCTCCTTCATATCGAGGTGTAAAGCATGTAAATGGGGATATGCTTGAAACAATACCAGATACACAGGCAATTATGCTGAAGAGAAATTGTTGGAATGCATTACCGAACAATGGGAAGGTTATAGTCGTTGAGTACTGTGTGCTGCCAGAAGTAATTGAGAAATCCCCAGAAACCAAAAACATGCTACTAGTCAGTGACCTGTTGATGATGACCTTCTTTAGCGGGAAGGAGCGATCAACTAGTCAATACGATGCCTTAGCCAAATCCGTTGGTTTCATCGAGACAAAGGCTTTTCCGATTTGCCATGGAACTTGTGTCATCGAGTTTCATAAGGGAAACGTTGGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

151

Amino Acids

16.33

Weight (kDa)

6.89

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 1 - 126 3.7e-24 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 324
AclI AACGTT 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 2 cut(s) 79, 149
AhlI ACTAGT 2 cut(s) 289, 341
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 377
ApeKI GCWGC 1 cut(s) 244
BauI CACGAG 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 377
BcuI ACTAGT 2 cut(s) 289, 341
BfaI CTAG 2 cut(s) 290, 342
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmcAI AGTACT 1 cut(s) 236
BmsI GCATC 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 358
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 10, 25
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 335
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 1 cut(s) 335
BssSI CACGAG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 2 cut(s) 10, 25
BstKTI GATC 1 cut(s) 338
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 335
BstNSI RCATGY 2 cut(s) 131, 286
BstV1I GCAGC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 10, 25
BtsIMutI CAGTG 2 cut(s) 94, 301
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 128, 283, 407
CviJI RGCY 4 cut(s) 68, 362, 392, 447
CviKI_1 RGCY 4 cut(s) 68, 362, 392, 447
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 358
DpnI GATC 1 cut(s) 337
DpnII GATC 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 3 cut(s) 131, 286, 410
FatI CATG 3 cut(s) 127, 282, 406
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 2 cut(s) 17, 32
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 2 cut(s) 290, 342
GluI GCNGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 131, 286, 410
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 1 cut(s) 382
HpyAV CCTTC 4 cut(s) 117, 211, 322, 325
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 131, 286, 410
Kzo9I GATC 1 cut(s) 335
LmnI GCTCC 2 cut(s) 109, 331
LpnPI CCDG 7 cut(s) 50, 100, 152, 171, 261, 282, 314
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 290, 342
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 45, 296
MalI GATC 1 cut(s) 337
MboI GATC 1 cut(s) 335
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 4 cut(s) 79, 171, 187, 255
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 5, 66, 110
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 202
NcoI CCATGG 1 cut(s) 406
NdeII GATC 1 cut(s) 335
NlaIII CATG 3 cut(s) 131, 286, 410
NmuCI GTSAC 2 cut(s) 45, 296
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 2 cut(s) 131, 286
PctI GAATGC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 441
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 236
SduI GDGCHC 1 cut(s) 106
SetI ASST 5 cut(s) 121, 222, 303, 317, 444
SfaNI GCATC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 132
SpeI ACTAGT 2 cut(s) 289, 341
Sse9I AATT 4 cut(s) 79, 171, 187, 255
SsiI CCGC 1 cut(s) 324
SspMI CTAG 2 cut(s) 290, 342
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 115, 381, 423
TasI AATT 4 cut(s) 79, 171, 187, 255
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TscAI CASTG 2 cut(s) 94, 301
TseFI GTSAC 2 cut(s) 45, 296
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 2 cut(s) 45, 296
TspDTI ATGAA 3 cut(s) 99, 367, 419
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 2 cut(s) 94, 301
XceI RCATGY 2 cut(s) 131, 286
XspI CTAG 2 cut(s) 290, 342
ZrmI AGTACT 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.