Rh5DG114500
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
10364290 .. 10366030
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG114500.1

Sequence Viewer

Length: 1086 bp
ATGGAAACCCAAGGAAGTCTGGAAAATTATGTCTCAGTTTGGAATATGGGAAATTCGGTCTGCATTCAAATGGCTCTAAGAGCTGCAATAGAGCTCGATGTCTTCAATATCATTGCTAAGTCAGGGCCAGAAGCTCATCTTACATCAAAAGAAATTGTTTCGGCAATCCCCACCACAAACCCAAATGTAGCAGCTAAGAATTTAGAGCGAATCCTTAAGCTTCTTAGTGTCAATTCCCTCCTTTCTACCTCTCTCAAACCAAGCCCAAATGACAAAACACCACAAGAAAGGGCTTATGGCCTAACAAAAAATGCACTTTGCCTGCTGCCAAATGAAGATGGAGTTTCTATAACACCAATGATTATGTTGGGCTCTGAAATGCACGTTATGCAGAGCTTATACATGCTCAAGCACTCAGTGCTTGAGCCAGAGAGTATTCCTTTCTCTAAATTCTATGGAGAAAATTTTTATGAATACATGTCCCAGAGACCTGAGATCTTTTCATTGTTCAACAAGCTCATGAGAACAGCCTCTTATTTATATTTTGATCAGAAGGTGCTTAAGGTTTATCGAGGTTTTGAAGAAGTGAAAGAGCTTATGGATGTAGGAGGTGGTGATGGAAGTTCCCTTGCAAAAATTGTGTCTATGTATCCTCACATCCATGGCATCAATTTCAACTTACCTAGTGTTATTGCTCAAGCTCCTAAATATCAAGGTGTGAAGCATGTCAGTGGAGACATGTTTGACTCGATACCAAAAACACAATCAATTATATTGAAGTGGGTACTTCATAACTGGGATGATGAGCACTGTAAGAAGATATTGAGAAACTGTTGGGAGGCGTTACCAGAAACCGGAAAAGTAATAGTCGTGGAATATTTCATGCTTCCCGAAGAATTGGAGAATACCCCAGAAACAATGCAGATATTAAAGGGTGACGTTTTGATGATGGCATTTTTTTATGGTAAGGAGCGAACAGTAGCTGAAATTGATAACCTAGCCAAATGTGTAGGGTTTATTGAAACAAAGATTGTCCATGTTTCTCATGGAATATATGTTATCGAGTTCCTCAAGATAAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

361

Amino Acids

40.82

Weight (kDa)

6.02

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 18 - 109 3e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 136 - 339 2.8e-52 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 52, 199, 449, 463
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 1 cut(s) 786
AfiI CCNNNNNNNGG 1 cut(s) 854
AflII CTTAAG 2 cut(s) 215, 560
AflIII ACRYGT 2 cut(s) 477, 738
AgsI TTSAA 7 cut(s) 68, 106, 511, 581, 676, 778, 1022
Alw21I GWGCWC 2 cut(s) 96, 810
Alw26I GTCTC 3 cut(s) 37, 481, 729
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 2 cut(s) 125, 298
ApeKI GCWGC 3 cut(s) 83, 191, 325
ApoI RAATTY 4 cut(s) 52, 199, 449, 463
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 626, 947
BanII GRGCYC 2 cut(s) 96, 374
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 96, 810
BbvI GCAGC 3 cut(s) 70, 203, 312
BccI CCATC 3 cut(s) 332, 611, 943
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 37, 481, 729
BfaI CTAG 2 cut(s) 684, 998
BfrI CTTAAG 2 cut(s) 215, 560
BfuI GTATCC 1 cut(s) 660
BglII AGATCT 1 cut(s) 495
BisI GCNGC 3 cut(s) 84, 192, 326
BlsI GCNGC 3 cut(s) 85, 193, 327
BmgT120I GGNCC 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 805
BmsI GCATC 1 cut(s) 675
BmuI ACTGGG 1 cut(s) 805
BpiI GAAGAC 1 cut(s) 94
BpuEI CTTGAG 4 cut(s) 392, 443, 681, 1055
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 10, 661
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse1I ACTGG 1 cut(s) 800
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 10, 661
BseGI GGATG 3 cut(s) 607, 657, 805
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 48, 429, 483
BseNI ACTGG 1 cut(s) 800
BseXI GCAGC 3 cut(s) 70, 203, 312
BshFI GGCC 2 cut(s) 127, 300
BsiHKAI GWGCWC 2 cut(s) 96, 810
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 854
BsmAI GTCTC 3 cut(s) 37, 481, 729
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 127, 300
Bso31I GGTCTC 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 96, 374, 810
Bsp143I GATC 2 cut(s) 495, 547
Bsp19I CCATGG 1 cut(s) 661
BspANI GGCC 2 cut(s) 127, 300
BspCNI CTCAG 3 cut(s) 47, 428, 484
BspHI TCATGA 1 cut(s) 519
BspTI CTTAAG 2 cut(s) 215, 560
BspTNI GGTCTC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 800
BssECI CCNNGG 2 cut(s) 10, 661
BssMI GATC 2 cut(s) 495, 547
BssT1I CCWWGG 2 cut(s) 10, 661
Bst4CI ACNGT 3 cut(s) 812, 833, 979
BstAFI CTTAAG 2 cut(s) 215, 560
BstAPI GCANNNNNTGC 2 cut(s) 388, 418
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 7 cut(s) 34, 77, 117, 195, 224, 415, 492
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 3 cut(s) 607, 657, 805
BstKTI GATC 2 cut(s) 498, 550
BstMAI GTCTC 3 cut(s) 37, 481, 729
BstMBI GATC 2 cut(s) 495, 547
BstMWI GCNNNNNNNGC 3 cut(s) 80, 388, 418
BstNSI RCATGY 4 cut(s) 406, 481, 728, 742
BstV1I GCAGC 3 cut(s) 70, 203, 312
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 127, 300
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 3 cut(s) 607, 657, 805
BtsIMutI CAGTG 3 cut(s) 423, 736, 808
Cac8I GCNNGC 1 cut(s) 323
CaiI CAGNNNCTG 1 cut(s) 983
CciI TCATGA 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 785
CviAII CATG 9 cut(s) 403, 478, 520, 662, 725, 739, 883, 1037, 1046
CviQI GTAC 1 cut(s) 785
DdeI CTNAG 7 cut(s) 34, 77, 117, 195, 224, 415, 492
DpnI GATC 2 cut(s) 497, 549
DpnII GATC 2 cut(s) 495, 547
DraIII CACNNNGTG 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 10, 661
Eco24I GRGCYC 2 cut(s) 96, 374
Eco31I GGTCTC 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 10, 661
EcoT38I GRGCYC 2 cut(s) 96, 374
ErhI CCWWGG 2 cut(s) 10, 661
FaeI CATG 9 cut(s) 406, 481, 523, 665, 728, 742, 886, 1040, 1049
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 466
FatI CATG 9 cut(s) 402, 477, 519, 661, 724, 738, 882, 1036, 1045
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 3 cut(s) 84, 192, 326
FokI GGATG 3 cut(s) 614, 644, 812
FriOI GRGCYC 2 cut(s) 96, 374
Fsp4HI GCNGC 3 cut(s) 84, 192, 326
FspBI CTAG 2 cut(s) 684, 998
GluI GCNGC 3 cut(s) 84, 192, 326
HaeIII GGCC 2 cut(s) 127, 300
HapII CCGG 1 cut(s) 855
Hin1II CATG 9 cut(s) 406, 481, 523, 665, 728, 742, 886, 1040, 1049
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 210, 746
HpaII CCGG 1 cut(s) 855
HphI GGTGA 2 cut(s) 626, 947
Hpy188I TCNGA 2 cut(s) 376, 552
Hpy188III TCNNGA 4 cut(s) 20, 520, 890, 1072
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 812, 833, 979
HpyCH4IV ACGT 2 cut(s) 384, 939
HpyCH4V TGCA 7 cut(s) 63, 86, 314, 382, 391, 632, 922
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 388, 418
HpyF3I CTNAG 7 cut(s) 34, 77, 117, 195, 224, 415, 492
HpySE526I ACGT 2 cut(s) 384, 939
Hsp92II CATG 9 cut(s) 406, 481, 523, 665, 728, 742, 886, 1040, 1049
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 2 cut(s) 495, 547
LmnI GCTCC 2 cut(s) 706, 970
Lsp1109I GCAGC 3 cut(s) 70, 203, 312
LweI GCATC 1 cut(s) 675
MaeI CTAG 2 cut(s) 684, 998
MaeII ACGT 2 cut(s) 384, 939
MaeIII GTNAC 2 cut(s) 843, 935
MalI GATC 2 cut(s) 497, 549
MboI GATC 2 cut(s) 495, 547
MboII GAAGA 5 cut(s) 94, 347, 593, 829, 905
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 3 cut(s) 96, 374, 810
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 8 cut(s) 248, 259, 541, 566, 602, 663, 832, 1079
MseI TTAA 4 cut(s) 216, 561, 929, 1084
MslI CAYNNNNRTG 3 cut(s) 68, 660, 729
MspCI CTTAAG 2 cut(s) 215, 560
MspI CCGG 1 cut(s) 855
Mva1269I GAATGC 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 80, 388, 418
NcoI CCATGG 1 cut(s) 661
NdeII GATC 2 cut(s) 495, 547
NlaIII CATG 9 cut(s) 406, 481, 523, 665, 728, 742, 886, 1040, 1049
NmuCI GTSAC 1 cut(s) 935
NspI RCATGY 4 cut(s) 406, 481, 728, 742
PagI TCATGA 1 cut(s) 519
PciI ACATGT 2 cut(s) 477, 738
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 3 cut(s) 85, 193, 327
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PscI ACATGT 2 cut(s) 477, 738
Psp124BI GAGCTC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 1 cut(s) 495
RsaI GTAC 1 cut(s) 786
RsaNI GTAC 1 cut(s) 785
RseI CAYNNNNRTG 3 cut(s) 68, 660, 729
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 216, 561, 929, 1084
SatI GCNGC 3 cut(s) 84, 192, 326
Sau3AI GATC 2 cut(s) 495, 547
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 740
SduI GDGCHC 3 cut(s) 96, 374, 810
SfaNI GCATC 1 cut(s) 675
SmiMI CAYNNNNRTG 3 cut(s) 68, 660, 729
SmlI CTYRAG 6 cut(s) 215, 407, 422, 560, 696, 1070
SmoI CTYRAG 6 cut(s) 215, 407, 422, 560, 696, 1070
SspI AATATT 1 cut(s) 878
SspMI CTAG 2 cut(s) 684, 998
SstI GAGCTC 1 cut(s) 96
StyI CCWWGG 2 cut(s) 10, 661
TaaI ACNGT 3 cut(s) 812, 833, 979
TaiI ACGT 2 cut(s) 387, 942
TaqI TCGA 4 cut(s) 96, 571, 749, 1062
TaqII GACCGA 1 cut(s) 46
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 4 cut(s) 216, 561, 929, 1084
Tru9I TTAA 4 cut(s) 216, 561, 929, 1084
TscAI CASTG 3 cut(s) 423, 736, 815
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 3 cut(s) 83, 191, 325
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 5 cut(s) 348, 486, 492, 779, 871
TspRI CASTG 3 cut(s) 423, 736, 815
Vha464I CTTAAG 2 cut(s) 215, 560
XapI RAATTY 4 cut(s) 52, 199, 449, 463
XceI RCATGY 4 cut(s) 406, 481, 728, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XspI CTAG 2 cut(s) 684, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.