Rroxscaffold_1G00061590
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000656
Physical Location & Seq
Reverse (-)
83683371 .. 83685196
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061590.1

Sequence Viewer

Length: 993 bp
ATGGGAACCCAAGGAAGTCTGGAAAATCATGTCTCAGTTTGGAATCTGGGAAATTCGGTTTGCATTCAAATGGCTCTAAGAGCTGCAATAGAGCTCGATGTCTTCAATATCATTGCTAAGTCAGGGCCAGAAGCTCATCTTACACCAAAAGAAATTGTTTCGGCAATCCCCACCACAAACCCAAATGTAGCAGCTAAGAATTTAGAGCGAATCCTTAAGCTTCTTAGTGTCAATTCCCTCCTTTCTACCTCTCTCAAACCAAGCCTAAATGACAAAACTCCACAAGAAAGGGCTTATGGCCTAACAAAAAATGCACTTTGCCTGGTGCCAAATGAAGATGGAGTTTCTATCGCACCAACAATTATGTTGGGCGCTGAAATGCACGTTATACAGAGCTTATGCATGCTCAAGTACTCGGTGCTTGAGCCAGAGAGTATTCCTTTCTATAAATCCCACGGAGAAAATTTTTATGAGTACATGTCCCAGAGACCTGAGACCTTTTCATTGTTCAACAAGCTCATGAGAACAACCTCTTATATATATTTTGATCAGAAGGTGCTTAAGGTTTATCGAGGTTTTGAAGAAGTGAAAGAGCTTATGGATGTAGGGGGTGGTGATGGAAGTTCCCTTGCAAAAATTGTGTCTATGTATCCTCACATCCATGGCATCAATTTCAACTTACCTAGTTGGGTACTTCATAACTGGGATGATGAGCATTGCAAGAAGATATTGAGAAACTGTTGGGAGGCGTTACCAGAAACTGGAAAGGTAATAGTTGTGGAATATTTCATGCTTCCCGAAGAATTGGAGAATAGCCCAGAAACAATGCAGATATTAACGGGTGACGTTATCATGATGACATTTTTTTATGGTAAGGAGCGAACAGTAGCTGAAATTGATAACCTAGCCAAATGTGTAGGGTTTATTGAAACAAAGATTGTCCATGTTTCTCATGGAACATATGTTATCGAGTTCCTCAAGAAAAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

330

Amino Acids

37.21

Weight (kDa)

5.9

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 14 - 109 2.1e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 142 - 229 3.1e-15 O-methyltransferase domain
Methyltransf_2 PF00891 230 - 308 2.8e-17 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 761
AcsI RAATTY 3 cut(s) 52, 199, 463
AfaI GTAC 3 cut(s) 413, 476, 693
AfiI CCNNNNNNNGG 1 cut(s) 761
AflII CTTAAG 2 cut(s) 215, 560
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 6 cut(s) 68, 106, 511, 581, 676, 929
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 9 cut(s) 83, 94, 134, 194, 220, 396, 517, 595, 890
AluI AGCT 9 cut(s) 83, 94, 134, 194, 220, 396, 517, 595, 890
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 37, 481, 488
AlwNI CAGNNNCTG 2 cut(s) 761, 890
AoxI GGCC 2 cut(s) 125, 298
ApeKI GCWGC 2 cut(s) 83, 191
ApoI RAATTY 3 cut(s) 52, 199, 463
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 626, 854
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 70, 203
BccI CCATC 2 cut(s) 332, 611
BciT130I CCWGG 1 cut(s) 323
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 37, 481, 488
BfaI CTAG 2 cut(s) 684, 905
BfoI RGCGCY 1 cut(s) 375
BfrI CTTAAG 2 cut(s) 215, 560
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 2 cut(s) 84, 192
BlsI GCNGC 2 cut(s) 85, 193
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 7, 327
BmrFI CCNGG 1 cut(s) 323
BmrI ACTGGG 1 cut(s) 712
BmsI GCATC 1 cut(s) 675
BmuI ACTGGG 1 cut(s) 712
BpiI GAAGAC 1 cut(s) 94
BpuEI CTTGAG 3 cut(s) 392, 443, 962
BsaI GGTCTC 2 cut(s) 481, 488
BsaJI CCNNGG 3 cut(s) 10, 454, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse1I ACTGG 2 cut(s) 707, 766
Bse3DI GCAATG 2 cut(s) 111, 715
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 3 cut(s) 10, 454, 661
BseGI GGATG 3 cut(s) 607, 657, 712
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 2 cut(s) 111, 715
BseMII CTCAG 2 cut(s) 48, 483
BseNI ACTGG 2 cut(s) 707, 766
BseXI GCAGC 2 cut(s) 70, 203
BshFI GGCC 2 cut(s) 127, 300
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 37, 481, 488
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 127, 300
Bso31I GGTCTC 2 cut(s) 481, 488
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 547
Bsp19I CCATGG 1 cut(s) 661
BspANI GGCC 2 cut(s) 127, 300
BspCNI CTCAG 2 cut(s) 47, 484
BspHI TCATGA 2 cut(s) 519, 852
BspLI GGNNCC 2 cut(s) 7, 327
BspT107I GGYRCC 1 cut(s) 325
BspTI CTTAAG 2 cut(s) 215, 560
BspTNI GGTCTC 2 cut(s) 481, 488
BsrDI GCAATG 2 cut(s) 111, 715
BsrI ACTGG 2 cut(s) 707, 766
BssECI CCNNGG 3 cut(s) 10, 454, 661
BssMI GATC 1 cut(s) 547
BssT1I CCWWGG 2 cut(s) 10, 661
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 740, 886
BstAFI CTTAAG 2 cut(s) 215, 560
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 6 cut(s) 34, 77, 117, 195, 224, 492
BstDSI CCRYGG 2 cut(s) 454, 661
BstF5I GGATG 3 cut(s) 607, 657, 712
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 3 cut(s) 37, 481, 488
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 406, 481
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 70, 203
BstV2I GAAGAC 1 cut(s) 94
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 127, 300
BtgI CCRYGG 2 cut(s) 454, 661
BtsCI GGATG 3 cut(s) 607, 657, 712
Cac8I GCNNGC 1 cut(s) 404
CaiI CAGNNNCTG 2 cut(s) 761, 890
CciI TCATGA 2 cut(s) 519, 852
CfoI GCGC 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 412, 475, 692
CviAII CATG 9 cut(s) 29, 403, 478, 520, 662, 790, 853, 944, 953
CviQI GTAC 3 cut(s) 412, 475, 692
DdeI CTNAG 6 cut(s) 34, 77, 117, 195, 224, 492
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 10, 661
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 2 cut(s) 481, 488
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 2 cut(s) 10, 661
EcoT22I ATGCAT 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 10, 661
FaeI CATG 9 cut(s) 32, 406, 481, 523, 665, 793, 856, 947, 956
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 466
FatI CATG 9 cut(s) 28, 402, 477, 519, 661, 789, 852, 943, 952
FauNDI CATATG 1 cut(s) 961
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 84, 192
FokI GGATG 3 cut(s) 614, 644, 719
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 84, 192
FspBI CTAG 2 cut(s) 684, 905
GlaI GCGC 1 cut(s) 373
GluI GCNGC 2 cut(s) 84, 192
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 2 cut(s) 127, 300
HhaI GCGC 1 cut(s) 374
Hin1II CATG 9 cut(s) 32, 406, 481, 523, 665, 793, 856, 947, 956
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 43, 210
HphI GGTGA 2 cut(s) 626, 854
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 5 cut(s) 20, 520, 797, 853, 979
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 2 cut(s) 740, 886
HpyCH4IV ACGT 2 cut(s) 384, 846
HpyCH4V TGCA 8 cut(s) 63, 86, 314, 382, 402, 632, 720, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 6 cut(s) 34, 77, 117, 195, 224, 492
HpySE526I ACGT 2 cut(s) 384, 846
Hsp92II CATG 9 cut(s) 32, 406, 481, 523, 665, 793, 856, 947, 956
HspAI GCGC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 1 cut(s) 547
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 2 cut(s) 70, 203
LweI GCATC 1 cut(s) 675
MaeI CTAG 2 cut(s) 684, 905
MaeII ACGT 2 cut(s) 384, 846
MaeIII GTNAC 2 cut(s) 750, 842
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 5 cut(s) 94, 347, 593, 736, 812
MhlI GDGCHC 1 cut(s) 96
MnlI CCTC 7 cut(s) 248, 259, 541, 566, 663, 739, 986
Mph1103I ATGCAT 1 cut(s) 404
MseI TTAA 4 cut(s) 216, 561, 836, 991
MslI CAYNNNNRTG 2 cut(s) 68, 660
MspCI CTTAAG 2 cut(s) 215, 560
MspR9I CCNGG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 961
NdeII GATC 1 cut(s) 547
NlaIII CATG 9 cut(s) 32, 406, 481, 523, 665, 793, 856, 947, 956
NlaIV GGNNCC 2 cut(s) 7, 327
NmuCI GTSAC 1 cut(s) 842
NsiI ATGCAT 1 cut(s) 404
NspI RCATGY 2 cut(s) 406, 481
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 2 cut(s) 519, 852
PciI ACATGT 1 cut(s) 477
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 43, 210
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 2 cut(s) 85, 193
PscI ACATGT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 7, 327
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 2 cut(s) 761, 890
RsaI GTAC 3 cut(s) 413, 476, 693
RsaNI GTAC 3 cut(s) 412, 475, 692
RseI CAYNNNNRTG 2 cut(s) 68, 660
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 216, 561, 836, 991
SatI GCNGC 2 cut(s) 84, 192
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 675
SmiMI CAYNNNNRTG 2 cut(s) 68, 660
SmlI CTYRAG 5 cut(s) 215, 407, 422, 560, 977
SmoI CTYRAG 5 cut(s) 215, 407, 422, 560, 977
SphI GCATGC 1 cut(s) 406
SspI AATATT 1 cut(s) 785
SspMI CTAG 2 cut(s) 684, 905
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 2 cut(s) 10, 661
TaaI ACNGT 2 cut(s) 740, 886
TaiI ACGT 2 cut(s) 387, 849
TaqI TCGA 3 cut(s) 96, 571, 969
TatI WGTACW 2 cut(s) 411, 474
TfiI GAWTC 2 cut(s) 43, 210
Tru1I TTAA 4 cut(s) 216, 561, 836, 991
Tru9I TTAA 4 cut(s) 216, 561, 836, 991
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 2 cut(s) 83, 191
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 4 cut(s) 348, 492, 686, 778
TspGWI ACGGA 1 cut(s) 471
Van91I CCANNNNNTGG 1 cut(s) 761
Vha464I CTTAAG 2 cut(s) 215, 560
XapI RAATTY 3 cut(s) 52, 199, 463
XceI RCATGY 2 cut(s) 406, 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XspI CTAG 2 cut(s) 684, 905
ZrmI AGTACT 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.